1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACCGGATCTGGTGTACCGCTTCTATCAGGAGGCTAGTCGCCTCGGCCGCCCCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccaccgtccccggtcacccagatctgtcgctttagtttcatttcgatcgcgatgctgagagattttggggggccttgtgcgcctatgcag
species | Zea mays |
transcript | GRMZM2G091995_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|71768664|gb|DR966601.1|DR966601
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|37425130|gb|CF650301.1|CF650301
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|149078936|gb|EE167772.2|EE167772
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CGCATCCGCCGCCGGAGCCCGCCGG-ATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|50336246|gb|CO531372.1|CO531372
genomic: CGCATCCGCCGCCGGAGCC-GCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|148964753|gb|EC906012.2|EC906012
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|94473274|gb|EB702232.1|EB702232
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|211393824|gb|FK983472.1|FK983472
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|211396446|gb|FK983487.1|FK983487
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|148956890|gb|EC902811.2|EC902811
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|211396444|gb|FK983485.1|FK983485
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|211396441|gb|FK983482.1|FK983482
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|211393820|gb|FK983468.1|FK983468
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|211393826|gb|FK983474.1|FK983474
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGSATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|149047149|gb|EE048155.2|EE048155
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|211393819|gb|FK983467.1|FK983467
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|148959103|gb|EE010585.2|EE010585
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|211396445|gb|FK983486.1|FK983486
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAAATGGAGATGGACGTGTCAAAAGCGGAGATCAGEST: gi|211396437|gb|FK983478.1|FK983478
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAA-TGGAGATGGACGTGTCAAAAGCGGAGATCAG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|148957059|gb|EC903023.2|EC903023
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|211393821|gb|FK983469.1|FK983469
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|91055356|gb|EB165774.1|EB165774
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGGEST: gi|211393825|gb|FK983473.1|FK983473
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
EST: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAG GCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
genomic: CCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccacc ... gcctatgcagGCAATCGGCGAGAAGATAATGGAGATGGACGTGTCAAAAGCGGAGATCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCGGATCTGGTGTACCGCTTCTATCAGGAGGCTAGTCGCCTCGGCCGCCCCGCATCCGCCGCCGGAGCCGCCGGCATGGACTCCGTCACCACTATGGAGgtgagccaccgtccccggtcacccagatctgtcgctttagtttcatttcgatcgcgatgctgagagattttggggggccttgtgcgcctatgcag
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