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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTGCACCAAACCGACAGCTGGATCCGGCAGCAGCCCCCGGAGCAGATCTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcgaaacctaagatccttttgctctgtatcgagtgcccatggtcttgagagtctttgaatgttgtgtggcgaacatccacaaggtgggcattg...

Basic information

species Zea mays
transcript GRMZM2G091503_T04
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211515522|gb|FL138438.1|FL138438
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211513176|gb|FL138432.1|FL138432
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATC-TAG                         CATCTTGTCTGAAATCGTCT
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCT
EST: gi|211020826|gb|FL435096.1|FL435096
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211515518|gb|FL138434.1|FL138434
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTWG                         CATCTTGTCTGAAATCGTCTTGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211433350|gb|FL131195.1|FL131195
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|26557413|gb|CA829648.1|CA829648
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|60339827|gb|DN206800.1|DN206800
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|60346742|gb|DN213715.1|DN213715
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCATCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211513168|gb|FL138424.1|FL138424
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTTGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211513170|gb|FL138426.1|FL138426
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|26456106|gb|CA827689.1|CA827689
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCCATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211515523|gb|FL138439.1|FL138439
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|21809710|gb|BQ668028.1|BQ668028
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|89106845|gb|DY577062.1|DY577062
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|22935960|gb|BU572235.1|BU572235
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|60344808|gb|DN211781.1|DN211781
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCATCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211513175|gb|FL138431.1|FL138431
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211515531|gb|FL138440.1|FL138440
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCTTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|22818765|gb|BU498855.1|BU498855
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|26559708|gb|CA831943.1|CA831943
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|22520628|gb|BU079439.1|BU079439
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211513172|gb|FL138428.1|FL138428
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACANCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|32914426|gb|CF019238.1|CF019238
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|26559949|gb|CA832184.1|CA832184
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
EST: gi|211515519|gb|FL138435.1|FL138435
EST:     CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAG                         CATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA
genomic: CTATGTAGCGGCCGCGGTGGTTGCCGTCACAATCCTGTTGCTTATCGTAGgtgcggtgcg ... ttttctgcagCATCTTGTCTGAAATCGTCTAGACCAAACACCATAGTTCTATCTGGGCTTA