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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTACACCAAGCTCGACAACGTTGGTCCGGAGGACTTCTACTGCCGATTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttttgatcttatgtgacattgtttgtatgtgaag

Basic information

species Zea mays
transcript GRMZM2G091265_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091265_T05 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g21770.1 (Oryza sativa), 5'ss of exon 2
AGAGCTACACCAAGCTCGACAACGTTGGTCCGGAGGACTTCTACTGCCGATTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgta------caaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattat---ttttgcttctgatg-taatg-----tgggatttttgatcttatgtgacattgtttgtatgtgaag
||| ||||||||||||||||||||| || || |||||||||| |||||| || || ||||||||||||||||| || |||||||||||||| |||||||||||      | || | |  |   || | | | | ||  |  ||     | |  |   | || | | |    |||| || |  || |||||     |||   ||||| | ||  |||    ||| ||| |||| ||
AGAACTACACCAAGCTCGACAACGTCGGCCCCGAGGACTTCTTCTGCCGCTTCGAGTACAAGGCCGCCACCGGCGCCTTCACCCCCGACCGCGTCGCCGTgtatttgctccaaccccccctccttttttgatcattgattttgcatctgcttgttgttatgcaatgtgggctttggttgtactgataatggttggtggtggttttggt-ttgggtgtgtgtgtgtgtgtgtgcag

upper sequence: GRMZM2G091265_T05 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA12G20180.1 (Glycine max), 5'ss of exon 2
AGAGCTACACCAAGCTCGACAACGTTGGTCCGGAGGACTTCTACTGCCGATTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagctcttccttttctgtaaccttttgtcatgtggtggttaatcagtttgtattatttttgcttctgatgtaatgtgggatttttgatcttatgtgacattgtttgtatgtgaag
||| |||||||||||| || || || ||| | ||||| | ||| ||  |||| || ||||||||||||||||| || |||||||| |||||||| || ||||    || | |||| ||| || ||         || ||    ||  |    |   |||||         |    |   || |    | |||   | |   ||||| ||||         
AGAACTACACCAAGCTTGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTCGAGTACAAGGCCGCCACCGGGGCTTTCACCCCTGACCGTGTTGCTGTgtg---agtttttccctttttgaaa------aaaatatg----ttttttccctcaaattatccagaaagttcgattttggtagtgcctatgagaatttaatacattttttggt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211264339|gb|FL410550.1|FL410550
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|211292773|gb|FL412753.1|FL412753
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|9952858|gb|BE639441.1|BE639441
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|50325986|gb|CO521112.1|CO521112
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|148933222|gb|EC876874.2|EC876874
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|211469231|gb|FL410779.1|FL410779
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|78091413|gb|DV519787.1|DV519787
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|60349186|gb|DN216159.1|DN216159
EST:     CCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: CCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|78026942|gb|DV495329.1|DV495329
EST:     TCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|94476085|gb|EB705043.1|EB705043
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|60344966|gb|DN211939.1|DN211939
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|50325839|gb|CO520965.1|CO520965
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|71434213|gb|DR815263.1|DR815263
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|44682094|gb|CK787142.1|CK787142
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|60344681|gb|DN211654.1|DN211654
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|71434212|gb|DR815262.1|DR815262
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
EST: gi|60338381|gb|DN205354.1|DN205354
EST:     TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGT                         ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG
genomic: TTTGACTACAAGGCCGCCACCGGTGCATTCACCCCCGACCGTGTCGCCGTgtacaaagct ... gtatgtgaagATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTG