Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaacttgctgtctttccagttcttttcgtttcttagtttgtttatcaaaggtgcctattatacacggtttgtaaacattggttgaatttgcaatgtttcttttccag

Basic information

species Zea mays
transcript GRMZM2G091119_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 2
CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaacttgctgtctttccagttcttttcgtttcttagtttgtttatcaaaggtgcctattatacacggtttgtaaacattggttgaatttgcaatgtttcttttccag
|| |||||||| || |||||| |  |||| ||||||||||| || || |||||||||||||||||||| |||||||| ||||||||||| ||||||||||  ||| |  |        |  | |||| |  | |||  ||||      ||  |     ||  |||    ||  ||  | |  ||  |      |   || ||    ||
CTCGAAAGCCTTCCTGCTATGATTGGTGGAGTTTATTCGGACGATAACAACCTTCAGCTTGAGGCCACAACACAGTTCCGCAAGTTGCTTTCTATAGgtacaaacctctt--------aaatgttttgggctgttaccttgt-----gaaaataatagttgaacaaaagtt--aattactaattacacccattacaatttttaattag

upper sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 2
CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaacttgctgtctttccagttcttt-tcgtttcttagtttgtttatcaaaggtgcctattatacacggtttgtaaacattggttgaatttgcaatgtttcttttccag
 | |||  ||| ||||| ||||| | ||| ||||   | |||||||||||| | ||| |||||||||| || |||||||| |||||||| || || ||| |  |  |  ||||| |   ||| ||  |  ||| ||| ||| |   ||  |      | | | ||   |||||   |  |  ||| |  |   |               
TTGGAACACCTTCCAGCCATGGTTACTGGTGTTTTCACCGATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGTTGCTTTCGATTGgt-tagatattttgtctatggcgtttttcgttattttttaatttatggttctgaa-----tgtgaaacgatgtttgatgaattccgtttatctcctaccag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211097395|gb|FL161930.1|FL161930
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211099883|gb|FL161954.1|FL161954
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|148930623|gb|EE285320.2|EE285320
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211097397|gb|FL161932.1|FL161932
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211094918|gb|FL161916.1|FL161916
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCCATTGA-GAA-TTATCAAATCAGGTGTAGTTCCAAGA
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCC-ATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGA
EST: gi|149036989|gb|EE155227.2|EE155227
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|26457325|gb|CA828908.1|CA828908
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211097396|gb|FL161931.1|FL161931
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAA-TTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211089988|gb|FL161899.1|FL161899
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211099874|gb|FL161945.1|FL161945
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211092450|gb|FL161908.1|FL161908
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211092445|gb|FL161903.1|FL161903
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAATTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211094925|gb|FL161923.1|FL161923
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCCAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|22521415|gb|BU080226.1|BU080226
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211094923|gb|FL161921.1|FL161921
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211097403|gb|FL161938.1|FL161938
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGT-ATCANATCAGGTGTAGTTCCCAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211097405|gb|FL161940.1|FL161940
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211089987|gb|FL161898.1|FL161898
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAATTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211092453|gb|FL161911.1|FL161911
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211099881|gb|FL161952.1|FL161952
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTATAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211092447|gb|FL161905.1|FL161905
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|89252976|gb|DY624762.1|DY624762
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211097407|gb|FL161942.1|FL161942
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|149015249|gb|EE045043.2|EE045043
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211099875|gb|FL161946.1|FL161946
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211094919|gb|FL161917.1|FL161917
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGT-ATCAAATCAGGTGTAGTTCCCAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|149067410|gb|EE286973.2|EE286973
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211092451|gb|FL161909.1|FL161909
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211097406|gb|FL161941.1|FL161941
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211092454|gb|FL161912.1|FL161912
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211094926|gb|FL161924.1|FL161924
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211099880|gb|FL161951.1|FL161951
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAA-TTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211092455|gb|FL161913.1|FL161913
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAA-TTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211094922|gb|FL161920.1|FL161920
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|148982771|gb|EE028594.2|EE028594
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211097400|gb|FL161935.1|FL161935
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|148931614|gb|EC874737.2|EC874737
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
EST: gi|211097401|gb|FL161936.1|FL161936
EST:     TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAG                         AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT
genomic: TAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 405

CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 103

CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 105

CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 173

CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaactt ... tcttttccagAGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGAAAGCCTCCCAGCTATGGTCAGTGGGGTTTATTCGGATGACAATAACCTTCAGCTTGAGGCCACCACACAGTTTCGCAAGTTGCTATCTATAGgtattaacttgctgtctttccagttcttttcgtttcttagtttgtttatcaaaggtgcctattatacacggtttgtaaacattggttgaatttgcaatgtttcttttccag

- - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT