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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATACCAATTAACTTTGGGGCTAAATATGTTGTTGAATCTTCTGGTGTCCTTACAACGACTGATAAAGCATTAACACACTTAAAGgtttgtgtgtaccagaataatttctaacaatggcatccaattaactatctgcagatcttttcgtatcgaaaacatgttgatgtttctgttgtttttttacag

Basic information

species Zea mays
transcript GRMZM2G090808_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090808_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 5'ss of exon 7
------------TATACC---AATTAACTTTGGGGCTAAATATGTTGTTGAATCTTCTGGTGTCCTTACAACGACTGATAAAGCATTAACACACTTAAAGgtttgtgtgtaccagaataatttcta-acaatggcatccaattaactatctgcagatcttttcgtatcgaaaacatgttgatgtttctgttgtttttttacag
            ||| ||      ||||||||| ||| | ||||||||||||||||| |||||  ||||||| ||||| || ||||   |||| || |||||||||          |  ||||||| ||| || |||| || | |  |   |||    |||   | | || || ||| |||||||| | |   || |||  ||
AGATCCAGCAGATATTCCTTGGGGTAACTTTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGGCACATTTGAAGgtttgtac--------accatttctatacattgccatctaactgagaaatggcaagcttttatat-tggataaaatggtgatgtttttatgccttgtttgtag