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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATGAACTATTGCATCAAATGGAACCATATATTAATCAGgtaactcttaaactatttctctttgtattatggtgttaatgttttgctctagtagttacatatcttatttctacttttaatccagtagttgggagaggtgatctttgcatgagtccagtagaatttgaaccttctgtaagtgatgatttagtactggagcag

Basic information

species Zea mays
transcript GRMZM2G090752_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090752_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 10
GGATATGAACTATTGCATCAAATGGAACCATATATTAATCAGgtaactcttaaactatttctctttgtattatggtgttaatgttttgctctagtagttacatatcttatttctacttttaatccagtagttgggagaggtgatctttgcatgagtccagtagaatttgaaccttctgtaagtgatgatttagtactggagcag
|| ||||| || ||||||||||||||||| ||||| ||||||||   | || |  |||||  |||| | || |  |   ||| |  |    |  | | |  ||  ||||   | |  | ||||   || |||          |   |                                                         
GGGTATGAGCTGTTGCATCAAATGGAACCTTATATCAATCAGgtttgtgttta--tatttgcctttat-tttttatacaaatatgctatatt--ttgcttgattacttaggacaatatataatttggttgttcaactttaaaagtct---------------------------------------------------------