1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAAgtgagtacacagtggtccatttcaggggcgtacccagtgccgtaggcttcccgcactgtaccgggtccagggaagggtatctttaagcgtcaagccttac...
species | Zea mays |
transcript | GRMZM2G090573_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAA AACATCAAAGGAGATATCGGACCTTGAAGGGGAGCTACTATCAGTTAGAAAEST: gi|78111122|gb|DV529519.1|DV529519
genomic: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAAgtgagtacac ... cctggtacagAACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAA
EST: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAA AACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAAEST: gi|149094931|gb|EE180514.2|EE180514
genomic: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAAgtgagtacac ... cctggtacagAACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAA
EST: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAA AACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAAEST: gi|91054250|gb|EB164668.1|EB164668
genomic: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAAgtgagtacac ... cctggtacagAACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAA
EST: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAA AACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAAEST: gi|71437206|gb|DR818256.1|DR818256
genomic: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAAgtgagtacac ... cctggtacagAACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAA
EST: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAA AACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAAEST: gi|33467055|gb|CF244104.1|CF244104
genomic: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAAgtgagtacac ... cctggtacagAACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAA
EST: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAA AACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAAEST: gi|78118154|gb|DV536541.1|DV536541
genomic: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAAgtgagtacac ... cctggtacagAACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAA
EST: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAA AACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAAEST: gi|88746123|gb|DY530264.1|DY530264
genomic: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAAgtgagtacac ... cctggtacagAACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAA
EST: GCTGAAGAGATGCGCAAAAGTGTTTATGCAAATTATGCTGCATTCATCAA AACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAA
genomic: GCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAAgtgagtacac ... cctggtacagAACATCAAAGGAGATATCAGACCTTGAAGGGGAGCTACTATCAGTTAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAAgtgagtacacagtggtccatttcaggggcgtacccagtgccgtaggcttcccgcactgtaccgggtccagggaagggtatctttaagcgtcaagccttac
- - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC