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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgcgtctttgtttctgtctaaaactaaactacgattttgctgagaaccagtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag

Basic information

species Zea mays
transcript GRMZM2G089630_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g40090.4 (Oryza sativa), 5'ss of exon 2
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgcgtctttgtttctgtctaaaactaaactacgattttgctgagaaccagtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatt-tgttcgctgctatttgcttcgacag
||||  || || ||||| |||||||||||||| || || ||||| ||||||||||||||||||||||| || |||||||| || |||||||||||||| ||||||||       ||    ||  ||   |    |  |  |   |  ||||||  | | | ||         |  | |  | |  |  ||||                      ||   |||||| | ||||||   |||||||| |||  | || | |||||  |||   |   | | || ||   |||
GCAGTGCTGGATGCTGGAGCATGGATGTTCAACGTTGTGACATCAGTTGGTATCATCATGGTCAACAAGGCATTAATGGCCACACATGGTTTTAGTTTTGgtaagacatgctataattcctcactc--gtggttgaat-tgtcaagaatgccttgtccgcacg---------tcttatggatagttggacta----------------------aaccgaactatcgttgtgcagcaaaccagtcagatt-ttttgtgctaatgatgtgttccattgtgtgtttgtgcag

upper sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g12490.1 (Oryza sativa), 5'ss of exon 2
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgcgtctttgtttctgtctaaaactaaactacgattttgctgagaaccagtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag
|||||| |||| ||||| || |||||||||||  | || ||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||| |||| ||         |   | | ||  |||   | | || | ||  |||  ||     |   |  ||| |       ||    ||| ||| ||    |||      || | | |       |||| ||| || | ||                                                    
GCAGCATTAGATGCTGGAGCTTGGATGTTCAACATTGTGACATCTGTTGGTATCATCATGGTCAACAAGGCCTTAATGGCTACACATGGTTTTAGTTTTGgtacgataaa--ttgataatgctttattatttactcatatgtgt--gatcacttggaaagatgaatctgtaacaaactcagctactgaac-acatgcttgt-----actaatatgggggtgctattgct-tgtacag----------------------------------------------------

upper sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G08700.1 (Glycine max), 5'ss of exon 2
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgcgtctttgtttctgtctaaaactaaactacgattttgctgagaaccagtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag
|| ||  | || || |  ||||||||||||||||| || ||||| ||||| |||||||| || |||||||| || |||||  |  |||| || ||||| |||||   |   || |   ||   || ||  |    |||    ||    || | ||||| ||       |  |     ||| |   |||  |   || ||          | | | |||   ||||  |||     ||                                                    
GCTGCCGTGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCTCTTATGGCTTCAGTTTTGgtaaattc---ccta---ttcaatttcttaatggacgtttctgt-tattggcaaattc-cctatacgatcatgc---tctgatgttaattttttatctt--------ttaatgtgatttgtctattactgcttgcag----------------------------------------------------

upper sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA16G27820.1 (Glycine max), 5'ss of exon 1
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaaga-ccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgc--gtctttgtttctgtctaaaactaaactacgattttgctgagaacc---agtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag
|| ||  | || || |  ||||||||||||||||| || ||||| ||||| |||||||| || |||||||| || ||||| ||  |||| || ||||| |||||   || |   |||  | |   |   ||  | |  ||   |||   ||  |  ||  || |   || | || |  ||   |       |     |||||  |   | |    | | | |||   ||||  |||      |   ||   | | |                                       
GCTGCTATGGATGCAGCTGCATGGATGTTCAATGTTGTTACATCTGTTGGAATCATCATTGTAAACAAAGCTTTGATGGCCACTTATGGCTTCAGTTTTGgtaaattccttattcaatttcttaatgacatttctgt-tattggtatactgagtcttttcccaggtagtatatgatcatgatcatgctctgatgttaattttttttttatcttttaatgtgatttgtctattactgcttgcggccacaacattaacag-------------------------------------

upper sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT4G39390.2 (Arabidopsis thaliana), 5'ss of exon 2
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgcgtctttgtttctgtctaaaactaaactacgattttgctgagaaccagtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag
|| ||| |||||  ||   ||||| | |||||||| || || |||||||| |||||| | || |||||||| |||||||| ||  |||| |||||||||||| ||    |   |     |      || |  ||  | |  | ||     |    || ||    || |    |     |||||||| |  || ||| |   |       | | | ||  |                                                                     
GCGGCATTAGACATTGCATCATGGCTATTCAATGTGGTTACTTCCGTTGGAATCATCCTCGTTAACAAAGCTTTAATGGCTACTTATGGCTTTAGTTTCGgtgagtttttcttcttttatcacaaactcttcccttgaaatattagtcaacggggttgactt--gtttcaactcactactaaaactgatttaagatctgtttc----ttaatgtgatacag--------------------------------------------------------------------

upper sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT4G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgcgtctttgtttctgtctaaaactaaactacgattttgctgagaaccagtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag
||| || |||| ||||  || |||||||||||||| || || || |||||||||||||| || || ||||| |||||||| ||  |||| ||||| || ||||          |  | | |   ||  |        ||| |  |  ||    || | |   |  |  |  ||||  | | ||   |                                                                                                      
GCAACATTAGATGCTGCTGCTTGGATGTTCAATGTTGTTACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCTACTTATGGCTTTAGCTTTGgta----------cttcttcttcatcaaaaccttatttacaatcat-atcttcaaattatttgtctaatattttcaatttcaatgcag-----------------------------------------------------------------------------------------------------

upper sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
lower sequence: AT1G34020.1 (Arabidopsis thaliana), 5'ss of exon 2
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgcgtctttgtttctgtctaaaactaaactacgattttgctgagaaccagtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag
|||||  |||| ||||  || |||||||||||||||||||| || |||||||||||||| || || ||||| |||||||||||  |||||| ||| || |||||     |       |||| | || ||            |  ||| |  ||     ||| |   || |  ||||   |     | |  ||  || |||| |                                                                                      
GCAGCCGTAGATGCTGCTGCGTGGATGTTCAATGTCGTCACTTCTGTTGGTATCATCATTGTTAATAAAGCTTTAATGGCGACTTATGGTTATAGCTTTGgtaaagatttct-----cttttgctcttac---------ttaagacgttttctttgaaacctgtagctattcttctaatttg--tttacttatcatgttgcag--------------------------------------------------------------------------------------

upper sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 5'ss of exon 2
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgcgtctttgtttctgtctaaaactaaactacgattttgctgagaaccagtctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag
||| |  | || |||| |||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||| ||  |||| || ||||| |||| | ||            || |  |||| | | |  |||  |    |    |||| | | || | | | || ||          | || |   || |      |    |||| ||  |  |                                                                  
GCAACTGTTGATGCTGCCGCATGGATGTTCAATGTTGTCACTTCGGTTGGAATCATTATGGTCAACAAAGCCTTAATGGCTACATATGGATTCAGTTTTGgtatgtcc-----------ctcatgactatcaacccacacgctt----taatcaatttatcagcctttatattact---------catacgatagttctaaatgcattgtgtcttatgcatttc-----------------------------------------------------------------

upper sequence: GRMZM2G089630_T03 (Zea mays), 5'ss of exon 2
lower sequence: Vv18s0072g00080.t01 (Vitis vinifera), 5'ss of exon 1
GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgtgcccaacctttcgttcctataaccgcgtacgagtacgatgcctaattcacccgcgtctttgtttctgtctaaaactaaactacgattttgctgagaaccagt-ctaattaaactatggctgtgcatagaaccagtctgatcgtcttatactaatttgttcgctgctatttgcttcgacag
||||||||||| || | |||||||||||||||||| ||||| || ||||| || ||| | ||||||||||| |||||||| ||  |||| || ||||| |||||               ||| || ||| |     |||    | || |   |  || |      ||||| |  |||| || |  |     | |  | ||  || ||      ||  ||||                                                                     
GCAGCACTAGATGCAGCCGCATGGATGTTCAATGTTGTCACTTCTGTTGGGATTATCCTTGTCAACAAAGCATTAATGGCTACATATGGATTCAGTTTTGgtaa---------------ttcttttctaaa-----gtaaatttgcgttttttctttgattaatttcttt-tgcctgtgtatattttttacatgcatgtgtggataattctcacttcttaa---------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211182574|gb|FL404769.1|FL404769
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACGCATGGTTTTNGTT-CG                         CTACAACGTTGACTGGACTTCATTT
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTT
EST: gi|24462536|gb|BM660067.1|BM660067
EST:     TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211127243|gb|FL371391.1|FL371391
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACGCATGGTTTTRGTTTCG                         CTACAACGTTGACTGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|148969061|gb|EE019781.2|EE019781
EST:     TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211219466|gb|FL394123.1|FL394123
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACTCATGGTTTTAGTTTCG                         CTACAACGTTGACTGGACTTCATTTTGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|149088966|gb|EE178110.2|EE178110
EST:     TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211212172|gb|FL397455.1|FL397455
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACTGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|50326262|gb|CO521388.1|CO521388
EST:     TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|32919453|gb|CF024265.1|CF024265
EST:     TATCATCATGGTGAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACTGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211059840|gb|FL382528.1|FL382528
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACTCATGGTTTTAGTTTCG                         CTACAACGTTGACTGGACYTCATTTTGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211163062|gb|FL403922.1|FL403922
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACGCATGGTTTTRGTTTCG                         CTACAACGTTGACTGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211125396|gb|FL373706.1|FL373706
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACTCATGGTTTTAGTTTCG                         CTACAACGTTGACTGGACTTCATTTTGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211395001|gb|FL377443.1|FL377443
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACTCATGGTTTTAGTTTCG                         CTACAACGTTGACTGGACTTCATTTTGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211269202|gb|FL409758.1|FL409758
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACTGGACTTCATTTCGCGATGACGACC
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACC
EST: gi|37421524|gb|CF648462.1|CF648462
EST:     TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211421251|gb|FL404519.1|FL404519
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACGCATGGTTTTAGTT-CG                         CTACAACGTTGACTGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|110223714|gb|EC905612.1|EC905612
EST:     TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211231674|gb|FL380035.1|FL380035
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACGCATGGTTTTDGTTTCG                         CTACAACGTTGACTGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|71436369|gb|DR817419.1|DR817419
EST:     TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|148931222|gb|EC873991.2|EC873991
EST:     TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211030447|gb|FL427837.1|FL427837
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACTCATGGTTTTWGTTTCG                         CTACAACGTTGACTGGACTTCATTTTGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211403472|gb|FL414959.1|FL414959
EST:     TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACCGGACTTCATTTCGCGATGAC
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGAC
EST: gi|211421497|gb|FL416796.1|FL416796
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACGCATGGTTTTAGTT-CG                         CTACAACGTTGACTGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
EST: gi|211439743|gb|FL418515.1|FL418515
EST:     TATCATCATGGTCAACAAGGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACTGGACTTGCATTTCGCGATGACGACCTTGATGACATTA
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTT-CATTTCGCGATGACGACCTTGATGACATTA
EST: gi|149090129|gb|EE179428.2|EE179428
EST:     TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCG                         CTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG
genomic: TATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 30 (upstream exon), 20 (downstream exon)
Score: 2

GCAGCACTAGACGCTGGCGCATGGATGTTCAATGTCGTCACATCCGTTGGTATCATCATGGTCAACAAAGCCTTAATGGCGACGCATGGTTTTAGTTTCGgtaagaccgt ... gcttcgacagCTACAACGTTGACCGGACTTCATTTCGCGATGACGACCTTGATGACATTAGTAATGAAATGGCTGGGATATATTCAGCCGTCCTATCTACCGTTACCTGA




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