1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGGGTCCGCTCATAACAACTCAAATGAAGCGACTCATGCTGCAAGTGCATCAGAACGCCGCAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAGgtactcatgccttctttttttccttaaaaaaatggatcggtatttacaatgaatatgtttgactgtcacttgttttgtttatttatggtgctgcaaaatggctatgcattaaagatgaatgccctgtgctatctgcag
species | Zea mays |
transcript | GRMZM2G089466_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCAGAACGCCGTNNNAATGCTGCCCGAAATGCTGTGCNTNNNNATCCTNN NATCAATGCGCTGTTTGACCACTTCEST: gi|9952696|gb|BE639159.1|BE639159
genomic: TCAGAACGCCGCAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAGgtactcatgc ... ctatctgcagGATCAATGCGCTGTTTGACCACTTC
EST: TCAGAACGCCGCAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAG GATCAATGCGCTGTTTGACCACTTCAAGATGGCCCTGGATTGTTTCTTTGCEST: gi|71330752|gb|DR802164.1|DR802164
genomic: TCAGAACGCCGCAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAGgtactcatgc ... ctatctgcagGATCAATGCGCTGTTTGACCACTTCAAGATGGCCCTGGATTGTTTCTTTGC
EST: TCAGAACGCCGCAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAG GATCAATGCGCTGTTTGACCACTTCAAGATGGCCCTGGATTGTTTCTTTGCEST: gi|213175764|gb|FM182820.1|FM182820
genomic: TCAGAACGCCGCAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAGgtactcatgc ... ctatctgcagGATCAATGCGCTGTTTGACCACTTCAAGATGGCCCTGGATTGTTTCTTTGC
EST: TCANAACGCCGTNNNAATGCTGCCCGAAATGCTNNNCTTGCTAATCCTNN NATCAATGCGCTGTTTGACCACTEST: gi|14204262|gb|BG837939.1|BG837939
genomic: TCAGAACGCCGCAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAGgtactcatgc ... ctatctgcagGATCAATGCGCTGTTTGACCACT
EST: TCAGAACGCCGTAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAG GATCAATGCGCTGTTTGACCACTTCAAGATGGCCCTGGATTGTTTCTTTGCEST: gi|6056613|gb|AW091018.1|AW091018
genomic: TCAGAACGCCGCAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAGgtactcatgc ... ctatctgcagGATCAATGCGCTGTTTGACCACTTCAAGATGGCCCTGGATTGTTTCTTTGC
EST: TCAGAACGCCGCAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAG GATCAATGCGCTGTTTGACCACTTCAAGATGGCCCTGGATTGTTTCTTTGC
genomic: TCAGAACGCCGCAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAGgtactcatgc ... ctatctgcagGATCAATGCGCTGTTTGACCACTTCAAGATGGCCCTGGATTGTTTCTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGTCCGCTCATAACAACTCAAATGAAGCGACTCATGCTGCAAGTGCATCAGAACGCCGCAGAAATGCTGCCCGAAATGCTGTGCTTGCTAATCCTAGgtactcatgccttctttttttccttaaaaaaatggatcggtatttacaatgaatatgtttgactgtcacttgttttgtttatttatggtgctgcaaaatggctatgcattaaagatgaatgccctgtgctatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG