Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATAGGAGTTGAGAAGACCGCTTCTCAACAAGAAATAAAGAAGGTGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctcaaccataaacttgaatgtttttctataggcatttagtgcaaagtatctcaaatataatgttatatgttgctag

Basic information

species Zea mays
transcript GRMZM2G088440_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088440_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 5'ss of exon 2
ATTATAGGAGTTGAGAAGACCGCTTCTCAACAAGAAATAAAGAAGGTGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctcaaccataaacttgaatgtttttctataggcatttagtgcaaagtatctcaaatataatgttatatgttgctag
||  |||| ||||||| ||| ||||| || || |||||||||||||  |||||||| |||||  | || || || ||||| ||||||||||| |||||||||| ||||       ||| ||       |||| || |  ||| ||||| |  | |||||| |    |||||| || ||  ||
ATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTATCACAAGTTGGCCTTACGTCTTCATCCAGACAAGAATCCTGGAGATGAGgtaggatcttgtttccaaattt-------tttccatgg--attaagtgccatttgtctcaattgagctgttatgtgatgtcag