1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACCTGTTATTGTCCGTTTCTCTACAGTTGTGCATGAGCGTGGAAGCCCTGAGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgaggataaattttaactcgcctcctaggggaaagagatacatgtcttaactgttctatttttttttgttatgtcttaaaaagaaacattcttttt...
species | Zea mays |
transcript | GRMZM2G088212_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATEST: gi|211375400|gb|FK987885.1|FK987885
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGNCTGTGTTTTTCATACGAGATEST: gi|211023549|gb|FK987906.1|FK987906
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATEST: gi|28187880|gb|CB179490.1|CB179490
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: GACCTTGAGGGATCCACGTGGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACEST: gi|38229627|gb|CF919940.1|CF919940
genomic: GACCTTGAGGGATCCACGTGG-TTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATAC
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATEST: gi|211375397|gb|FK987882.1|FK987882
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATEST: gi|211372735|gb|FK987872.1|FK987872
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: AGACCTTGAGGGATCCACGTGNTTTTGCTGTCAAGTTNTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTTCATACGAGAEST: gi|32920070|gb|CF024882.1|CF024882
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTT-CATACGAGA
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATEST: gi|211021129|gb|FK987901.1|FK987901
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: AGACCTTGAGGGATCCACGNGNNTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATAEST: gi|211023559|gb|FK987916.1|FK987916
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATA
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATEST: gi|31356065|gb|CD440422.1|CD440422
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACCAGATEST: gi|211375396|gb|FK987881.1|FK987881
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATEST: gi|211023553|gb|FK987910.1|FK987910
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATEST: gi|211370083|gb|FK987860.1|FK987860
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATEST: gi|211370080|gb|FK987857.1|FK987857
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTGTTATTGTCCGTTTCTCTACAGTTGTGCATGAGCGTGGAAGCCCTGAGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgaggataaattttaactcgcctcctaggggaaagagatacatgtcttaactgttctatttttttttgttatgtcttaaaaagaaacattcttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaaa