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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccacaacccctctctctgtttatcctgtagctgacatgctgctgccttcatttgtctcgtctctccatcccggtttcattttcccttgcacgat...

Basic information

species Zea mays
transcript GRMZM2G088212_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088212_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g51150.1 (Oryza sativa), 5'ss of exon 2
CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccacaacccctctctctgtttatcctgtagctgacatgctgctgccttcatttgtctcgtctctccatcccggtttcattttcccttgcacgat------
|| || ||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |     |  | ||   |||  | |  |   |  ||  |        |  |  ||   ||   ||  |||||    | || || |   |||  | |        
CATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCCGCCCTCACCGTCGGAGAGCGAGgt-actgagctgctccatcctccatcttcctcatctcttcc---tccacgaatctatacttcctatcgatccatgt--gctttatgtctgcttagaggcgtatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67028432|gb|CO457181.1|CO457181
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211021126|gb|FK987898.1|FK987898
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|474220|gb|T18397.1|T18397
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTC-AATCCTCCTTGAG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAG
EST: gi|211372732|gb|FK987869.1|FK987869
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211375391|gb|FK987876.1|FK987876
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|8368640|gb|BE051585.1|BE051585
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211375400|gb|FK987885.1|FK987885
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211375398|gb|FK987883.1|FK987883
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211026003|gb|FK987922.1|FK987922
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAA                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211023549|gb|FK987906.1|FK987906
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211375395|gb|FK987880.1|FK987880
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211372737|gb|FK987874.1|FK987874
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211372728|gb|FK987865.1|FK987865
EST:     CGGCGCCCCCGTCTGTAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|18384490|gb|BM417689.1|BM417689
EST:     GGCGCCCCCGTCTGGTAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATTGAAAAGCTTGCTCAGTTCG
genomic: GGCGCCCCCGTCTGG-AACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211021125|gb|FK987897.1|FK987897
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|33771001|gb|CF273295.1|CF273295
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|32862678|gb|CF002360.1|CF002360
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211372729|gb|FK987866.1|FK987866
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211023550|gb|FK987907.1|FK987907
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|6536530|gb|AW224843.1|AW224843
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211372724|gb|FK987861.1|FK987861
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|8367742|gb|BE050687.1|BE050687
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|38229587|gb|CF919900.1|CF919900
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211375401|gb|FK987886.1|FK987886
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|37622130|gb|CF675183.1|CF675183
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211375397|gb|FK987882.1|FK987882
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211372735|gb|FK987872.1|FK987872
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211375399|gb|FK987884.1|FK987884
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTNAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211021123|gb|FK987895.1|FK987895
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|18384631|gb|BM417830.1|BM417830
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATTGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211021129|gb|FK987901.1|FK987901
EST:     GGCGCCCCCGTTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGNGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: GGCGCCCCCG-TCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|38229627|gb|CF919940.1|CF919940
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|37361299|gb|CF602588.1|CF602588
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211375402|gb|FK987887.1|FK987887
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|71442812|gb|DR823862.1|DR823862
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211023552|gb|FK987909.1|FK987909
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211372730|gb|FK987867.1|FK987867
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211021118|gb|FK987890.1|FK987890
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211021124|gb|FK987896.1|FK987896
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|31353478|gb|CD437835.1|CD437835
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211021127|gb|FK987899.1|FK987899
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211375403|gb|FK987888.1|FK987888
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|28188176|gb|CB179786.1|CB179786
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211375396|gb|FK987881.1|FK987881
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|33285619|gb|CF075414.1|CF075414
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211021121|gb|FK987893.1|FK987893
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211023556|gb|FK987913.1|FK987913
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|6626360|gb|AW257892.1|AW257892
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211023548|gb|FK987905.1|FK987905
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|33770680|gb|CF272974.1|CF272974
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211021122|gb|FK987894.1|FK987894
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211370082|gb|FK987859.1|FK987859
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|211370080|gb|FK987857.1|FK987857
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|20811112|gb|BQ295590.1|BQ295590
EST:     CGGCGCCCCCGACTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
EST: gi|71442811|gb|DR823861.1|DR823861
EST:     CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG                         GTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG
genomic: CGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 355

CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCGACAGAGAACGTATCCCTGAACGTGTTGTGCATGCACGGGGAGCCAGTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 593

CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCGACAGAGAACGTATCCCTGAACGTGTTGTGCATGCACGGGGAGCCAGTGC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 452

CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCGACAGAGAACGTATCCCTGAACGTGTTGTGCATGCACGGGGAGCCAGTGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 721

CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAGgtcagaccac ... tctttgacagGTCCAATCCTCCTTGAGGATTATCATCTAATCGAAAAGCTTGCTCAGTTCGACAGAGAACGTATCCCTGAACGTGTTGTGCATGCACGGGGAGCCAGTGC