1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAAACGAGCACTTTCTCGTGAACAGTGGGAGAGTTTGTTTTCAGCAAATGGGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcagtgtttattcattttccatccaaatcatccagatataggttgcatcagagattcatagttggctatctattgcatgtagttaaatacacagtcatgttgttatctcttctgttattgaagtgttttgtatcttagagtccaactgcattactgacataaatgcccctcttctattgtaccag
species | Zea mays |
transcript | GRMZM2G087144_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCCAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAEST: gi|149106092|gb|EE291756.2|EE291756
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGA
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAEST: gi|148939166|gb|EC883612.2|EC883612
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGA
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAEST: gi|50332287|gb|CO527413.1|CO527413
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGA
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTACGGCTGAAGTTTGGCCCTTCCTACTAGGAEST: gi|211397522|gb|FL373465.1|FL373465
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGA
EST: GGAAGCTTCGTGATGGTGGGAGGGAGTTTCTCAAGAAAGNTCGCAGTGGT GGCATGGAAGCAAG-ATTTAGGGGCTGAAGTTTGGCCCTTCCTACTAGGAEST: gi|211328212|gb|FL409834.1|FL409834
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATT-AGGG-CTGAAGTTTGGCCCTTCCTACTAGGA
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAEST: gi|211240372|gb|FL028808.1|FL028808
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGA
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAEST: gi|211240371|gb|FL028807.1|FL028807
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGA
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAEST: gi|211476313|gb|FL383250.1|FL383250
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGA
EST: AAGCTTCGTGATGGTGGAANGGAAAGTT-CTCA-GAAAGT-CGCAGTGGT GGCATTGAAGCA-GCATTAGGGCTGAAGTTTGCCCCTEST: gi|50325323|gb|CO520449.1|CO520449
genomic: AAGCTTCGTGATGGTGGAA-GGAA-GTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCT
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAEST: gi|148959376|gb|EC905424.2|EC905424
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGA
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCCTTCCTACTAGGAEST: gi|148964953|gb|EE015802.2|EE015802
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCC-TTCCTACTAGGA
EST: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGT GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGA
genomic: GGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcag ... attgtaccagGGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACGAGCACTTTCTCGTGAACAGTGGGAGAGTTTGTTTTCAGCAAATGGGAAGCTTCGTGATGGTGGAAGGAAGTTTCTCAAGAAAGTTCGCAGTGGTgtaagtgcagtgtttattcattttccatccaaatcatccagatataggttgcatcagagattcatagttggctatctattgcatgtagttaaatacacagtcatgttgttatctcttctgttattgaagtgttttgtatcttagagtccaactgcattactgacataaatgcccctcttctattgtaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA