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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTGGCGAGGCGGACTGTGGCTACTACCTCCGCACGGGCGCCTGCGGCTTCGGGGAGCGCTGCCGCTACAACCACCCTCGCGATCGTGGCGGCACTGAGgtgagcgcgtcgcgtccagaagccttcactctccccgatctgatccgtgtccgcgtccgagctgcttgctgctatcggcgaattgttccgtttcgggtag...

Basic information

species Zea mays
transcript GRMZM2G086994_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086994_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g15460.2 (Oryza sativa), 5'ss of exon 2
GCCTGGCGAGGCGGACTGTGGCTACTACCTCCGCACGGGCGCCTGCGGCTTCGGGGAGCGCTGCCGCTACAACCACCCTCGCGATCGTGGCGGCACTGAGgtgagcgcgtcgcgtccagaagccttcactctccccgatctgatccgtgtccgcgtccgagctgcttgctgctatcggcgaa-ttgttccgtttcgggtag------
||| || |||| |||||||| ||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||       |  | |     |    | || ||||||||| | |||  | || | || || ||  ||     | |  ||    | ||      || | |      
GCCCGGGGAGGAGGACTGTGTCTACTACCTCCGCACCGGCGCGTGCGGCTTCGGTGACCGCTGCCGCTACAACCACCCGCGCGATCGCGGCGGCACTGAGgtgagt------ctcctaattcgcgcttcccttcccgatctggttcgttgcggcttgcgcgc-gcgcgcgtgcgtggatgaggcagctctagggtggatggattaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148956013|gb|EC901749.2|EC901749
EST:     TCAGGGAGCGCTGCCGCTACAACCACCCTCGCGATCGTGGCGGCACTGAG                         TTTGGTGGAGGTGCCAAGAATGGAGCAGCACAATACTTTCCAGAACGACAA
genomic: TCGGGGAGCGCTGCCGCTACAACCACCCTCGCGATCGTGGCGGCACTGAGgtgagcgcgt ... aaaatattagTTTGGTGGAGGTGCCAAGAATGGAGCAGCACAATACTTTCCAGAACGACAA