ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcgattcatccgtccttataatacgtgccgtgtggtcagatctatgttcgtcccttgcgcccttgattaaaaacgtgtgtttcgaatttcgat...

Basic information

species	Zea mays
transcript	GRMZM2G086636_T01
intron #	2
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G086636_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g23620.1 (Oryza sativa), 5'ss of exon 2

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtc--gagctcgattcatccgtccttataatacgtgccgtgtggtcagatctatgttcgtcccttgcgcccttgattaaaaacgtgtgtttcgaatttcgat
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||  | ||     || |||  |  |   || |     |  || | |  | |   ||||  |  |  |  || | ||    ||| ||| |     | | | |
GACGTCGGAGGAGCTCAGCATCGGGAAGATCAAGTTCAAGGCCTTCGATCTCGGCGGCCACCAGATCGCCCGCCGCGTCTGGAAGGACTACTACGCCAAGgtctcgcgccaatctcttccaactattccattc-cattgcatgtttatgtttgcattcggtctctcagatctagtttgttgacg-gtgataactttctggct

upper sequence: GRMZM2G086636_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ35155 (Selaginella moellendorffii), 5'ss of exon 2

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagc--tcgattcatccgtccttataatacg-tgccgtgtggtcagatctatgttc--------gtcccttgcgcc--cttgattaaaaacgtgtgtttcga-atttcgat--------------------------------------------------------------------------------------
 || || |||||||| ||||||  ||||||||| |||||||||||||| || || || |||||||||||||| ||||| |||||||| ||||| || |||||    |  ||   | |    || ||  ||| |  |||  ||   |   | | ||| |         || | ||  |    ||||         || ||  | ||    | | |                                                                                      
AACATCCGAGGAGCTAAGCATCAACAAGATCAAATTCAAGGCCTTCGATCTGGGGGGTCACCAGATCGCGCGACGCGTGTGGAAGGACTACTATGCCAAGgtttgacactcatctgagaattctttcgaatccaatgctttgcctttgaagcgatgctttggcaaaagttctttttgttttcttgccagtggtggtttgactggacgacttgttctagatctagttgctaacgatgttttgtcacaaactcgtcagatgatctgactggattccatggcttgtttactttgatcatccag

upper sequence: GRMZM2G086636_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ16976 (Selaginella moellendorffii), 5'ss of exon 2

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcgattcatccgtccttataatacgtgccgtgtggtcagatctatgttcgtcccttgcgcccttgattaaaaacgtgtgtttcgaatttcgat
||| ||||||||||| ||||||||||||||||||||||| || || ||  | || || ||||||||||| || |||||||||||||| |||||||| |||||        | || || ||  |  |     |     | | |    |  | | |||     ||      |||  || | | |                  
GACCTCGGAGGAGCTGAGCATCGGCAAGATCAAGTTCAAAGCGTTTGATTTGGGAGGTCACCAGATCGCTCGTCGCGTCTGGAAGGACTACTACGCCAAGgtttgtgggaaatcttctgtgttcttgg-gtgaaaactatagcactaattgt-ttctctttttttttttttggctatacaag------------------

upper sequence: GRMZM2G086636_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ12822 (Selaginella moellendorffii), 5'ss of exon 2

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtc---gagctcgattcatccgtccttataatacgtgccgtgtggtcagatctatg-ttcgtcccttgcgcccttgattaaaaacgtgtgtttcgaatttcgat
||| ||||||||||| ||||| ||||||||||||||||| || || || || ||||| ||||||||||| || |||||||||||||| |||||||| |||||    | |   |||||  |  || |  |  |   ||          | | |  |  ||  || ||       |||  || | | |                  
GACCTCGGAGGAGCTGAGCATAGGCAAGATCAAGTTCAAAGCGTTTGATCTGGGCGGTCACCAGATCGCTCGTCGCGTCTGGAAGGACTACTACGCCAAGgtttgtgggaaagattctcctttcttctttgtttttgggtgaaaactatagcactaatttttctctcttttttttggctatacaag------------------

upper sequence: GRMZM2G086636_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ24104 (Selaginella moellendorffii), 5'ss of exon 2

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg-attcatccgtccttata-atacgtgccgtgtggtcagatctatgttcgtcccttgcgcccttgattaaaaacgtgtgtttcgaatttcgat
 || || |||||||| ||||||  ||||||||| |||||||||||||| || || || |||||||||||||| ||||| |||||||| ||||| || ||||| |  | |  ||       | ||| ||  |   |||| ||   |   |   |   || |  ||||   | ||  ||     | |   | || |||     |
AACATCCGAGGAGCTAAGCATCAACAAGATCAAATTCAAGGCCTTCGATCTGGGGGGTCACCAGATCGCGCGACGCGTGTGGAAGGACTACTATGCCAAGgttggacactcatctgagaattcttttatgtgtttgccttggttttctactcaaactccttgcttgaatcgttacttgtt--ctttcttatcaaatgctcgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211533641|gb|FL413015.1|FL413015

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|149069070|gb|EE157797.2|EE157797

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211046055|gb|FL423458.1|FL423458

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|22935932|gb|BU572207.1|BU572207

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|21760064|gb|BQ635605.1|BQ635605

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|21389950|gb|BQ527999.1|BQ527999

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|148932977|gb|EE285840.2|EE285840

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211129201|gb|FL391824.1|FL391824

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GT-GATGCTGTAGTATACCTGGTAGATGCGTAT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTAT

EST: gi|110937639|gb|EE157796.1|EE157796

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|148959808|gb|EC905681.2|EC905681

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|148929991|gb|EE285839.2|EE285839

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|71299332|gb|DR785680.1|DR785680

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|23199717|gb|BU582282.1|BU582282

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|21432336|gb|BQ547826.1|BQ547826

EST:     TCGCGCGCCGCGTCTGGAAGGTATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGCGCGCCGCGTCTGGAAGG-ATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211060935|gb|FL426114.1|FL426114

EST:     CGGCGGCCACCAGATCGCGCGCCGCGTCTGGGAAG-AT-ACTACGCAAAG                         GGTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: CGGCGGCCACCAGATCGCGCGCCGCGTCTGG-AAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211085788|gb|FL424010.1|FL424010

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211348453|gb|FL392065.1|FL392065

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211024743|gb|FL044312.1|FL044312

EST:     TCGGCGGCCACCAGATCGCGCGCCGS-TCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATA
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATA

EST: gi|149109697|gb|EE293483.2|EE293483

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|21987582|gb|BQ779110.1|BQ779110

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|22542129|gb|BU092567.1|BU092567

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211439391|gb|FL402872.1|FL402872

EST:     TCGGCGGCCACCAGATCGCGCGCCG--TCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATAC-TGGTAGATGCGTATGAT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGAT

EST: gi|211413154|gb|FL382739.1|FL382739

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGYAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|22549119|gb|BU101320.1|BU101320

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|71448031|gb|DR829081.1|DR829081

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|71299331|gb|DR785679.1|DR785679

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|26457274|gb|CA828857.1|CA828857

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211108573|gb|FL429115.1|FL429115

EST:     TCGGCGGCCACCAGATCGCGCGCCGS-TCTGGWAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATKATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|71324424|gb|DR798913.1|DR798913

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|32914295|gb|CF019107.1|CF019107

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTCGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211323623|gb|FL398325.1|FL398325

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGC
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGC

EST: gi|211324183|gb|FL424995.1|FL424995

EST:     TCGGCGGCCACCAGATCGCGCGCCGS-TCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211060712|gb|FL417012.1|FL417012

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|60359059|gb|DN226032.1|DN226032

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|22521649|gb|BU080460.1|BU080460

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|91873491|gb|EB403448.1|EB403448

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211497279|gb|FL426468.1|FL426468

EST:     CGGCGGCCACCAGATCGCGCGCCGS-TCTGGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCG
genomic: CGGCGGCCACCAGATCGCGCGCCGCGTCTGG-AAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCG

EST: gi|211022294|gb|FL044303.1|FL044303

EST:     TCGGCGGCCACCAGATCGCGCGCCS--TCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTA
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTA

EST: gi|211421415|gb|FL412839.1|FL412839

EST:     TCGGCGGCCACCAGATCGCGCGCCGS-TCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGGTAGATGCG
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGG-TAGATGCG

EST: gi|211068888|gb|FL409572.1|FL409572

EST:     TCGGCGGCCACCAGATCGCGCGCCGS-TCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|22542479|gb|BU092917.1|BU092917

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTAGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211276737|gb|FL373275.1|FL373275

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|211173153|gb|FL413941.1|FL413941

EST:     TCGGCGGCCACCAGATCGCGCGCCGS-TCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATT

EST: gi|211276738|gb|FL373276.1|FL373276

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACSCAAAG                         GTTGATGCTGTAGTATACC
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACC

EST: gi|20811061|gb|BQ295539.1|BQ295539

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACTTATAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|91050481|gb|EB160899.1|EB160899

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|30307030|gb|CD001703.1|CD001703

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

EST: gi|148931434|gb|EC874400.2|EC874400

EST:     TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAG                         GTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT
genomic: TCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 142

GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcg ... attgcaacagGTTGATGCTGTAGTATACCTGGTAGATGCGTATGATAAGGAGCGATTTGCTGAATCAAAAAAGGAGCTGGACGCTCTCCTGTCAGATGATTCCTTGGCAA

Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 122

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 121

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 137

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGTCGGAGGAGCTCAGCATCGGCAAGATCAAGTTCAAGGCCTTCGACCTCGGCGGCCACCAGATCGCGCGCCGCGTCTGGAAGGATTACTACGCAAAGgtcgagctcgattcatccgtccttataatacgtgccgtgtggtcagatctatgttcgtcccttgcgcccttgattaaaaacgtgtgtttcgaatttcgat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG