1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgtggcctgcgcctttgcaatccttacattgttgccctttgcaggtttgcgttcgttgctgttcttttctgtggtgtgctgttttgtctgtgt...
species | Zea mays |
transcript | GRMZM2G085670_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|101390708|gb|EB817288.1|EB817288
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|32927905|gb|CF032717.1|CF032717
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|71423346|gb|DR806010.1|DR806010
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|211281967|gb|FL132368.1|FL132368
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|211512613|gb|FL228206.1|FL228206
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|32927110|gb|CF031922.1|CF031922
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|211512616|gb|FL228209.1|FL228209
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|71764777|gb|DR962714.1|DR962714
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|76936648|gb|DV174824.1|DV174824
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|211512615|gb|FL228208.1|FL228208
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|149000178|gb|EE037317.2|EE037317
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|32927326|gb|CF032138.1|CF032138
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|211512608|gb|FL228201.1|FL228201
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|211512618|gb|FL228211.1|FL228211
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|76294401|gb|DV033969.1|DV033969
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|211512612|gb|FL228205.1|FL228205
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|211512617|gb|FL228210.1|FL228210
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|89247571|gb|DY619357.1|DY619357
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|32928013|gb|CF032825.1|CF032825
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGGTGTCTGATCAGGTCCGAAAGCTAAEST: gi|31360706|gb|CD445063.1|CD445063
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCAGGATCCCTTCCAGCATTGTTGCCGGATCAGGTCCGAAAGCTAAEST: gi|211281965|gb|FL132366.1|FL132366
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|32927322|gb|CF032134.1|CF032134
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|211512610|gb|FL228203.1|FL228203
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|211514961|gb|FL228214.1|FL228214
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|101398140|gb|EB820944.1|EB820944
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAAEST: gi|32927333|gb|CF032145.1|CF032145
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGA ATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgt ... gcaagtgtagATAATTCGGGATCCCTTCCAGCATTGTTGCCTGATCAGGTCCGAAAGCTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGCTGGCACTCAGTACTCGTCTTCACTGGACTTGCTCCGGCTCTTCGCCTATGGCACCTTGAAGGACTATAAGAgtaagatcgtggcctgcgcctttgcaatccttacattgttgccctttgcaggtttgcgttcgttgctgttcttttctgtggtgtgctgttttgtctgtgt
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