Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATGCACAACTGTTTTAAAGAGACGGCAGAGGCATTCCTATCTAGCACCGGGTTGAATTTACCTGTCGACTATAGTGTGGATGTGGATAAGCGTAAAGgtatttatttgcaggtcaatactggatctttcctacattattatgttttagggggcgctttacttgtcatattgcatgatgaagtactatttgtatgttt...

Basic information

species Zea mays
transcript GRMZM2G085602_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085602_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g56820.2 (Oryza sativa), 5'ss of exon 2
CTTATGCACAACTGTTTTAAAGAGACGGCAGAGGCATTCCTATCTAGCACCGGGTTGAATTTACCTGTCGACTATAGTGTGGATGTGGATAAGCGTAAAGgtatttatttgcaggtcaatactggatctttcctacattattatgttttagggggcgctttacttgtcatatt-gcatgatgaagtactatttgtatgttt-
|||||||||||||||||||| ||||| || ||| ||||| |||| ||||| || ||| |  | ||||| || || | ||| ||||| ||||||||||||||||||||||  ||  |||| |||| |||||   |   |  ||   | ||         |  | |||    ||  |||   |  | |  |||  ||  |||  
CTTATGCACAACTGTTTTAAGGAGACTGCTGAGACATTCTTATCCAGCACTGGTTTGGAACTGCCTGTTGATTACACTGTAGATGTAGATAAGCGTAAAGgtatttattcacatatcaacactgaatcttgtatctttctttggatgttcaacacttgtaaaattgctgcataagcactttatattgttat--gttagttca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211435652|gb|FL005830.1|FL005830
EST:     CGGGTTGAATTTACCTGTCGACTATAGTGTGGATGTGGATAAGCGTAAAG                         CAATTTTTAATTTTGTGCTAGAAGGGAATGCCCTTAAAGCCATAGAGCTGA
genomic: CGGGTTGAATTTACCTGTCGACTATAGTGTGGATGTGGATAAGCGTAAAGgtatttattt ... tttctttcagCAATTTTTAATTTTGTGCTAGAAGGGAATGCCCTTAAAGCCATAGAGCTGA