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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCGAAGCACCCGGTGGATGGGTTCTCTGCTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcagatcctctccatttcaagcgtgcttccatgccttgtcaagatgaattgcttgtttgttgtgtcggtgccacgagcaatggactacgatggtg...

Basic information

species Zea mays
transcript GRMZM2G085600_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g62244.1 (Oryza sativa), 5'ss of exon 2
TCGCGAAGCACCCGGTGGATGGGTTCTCTGCTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcagatcctctcc---atttcaagcgtgcttccatgccttgtcaagatgaattgcttgtttgttgtgtcggtgccacgagcaatggactacgatggtg
||||||||||||| |||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||  ||| |||||    |||  | || ||||||||||  |  ||    | |   |  |   ||   ||   |||    |     | |  ||     |  
TCGCGAAGCACCCCGTGGATGGGTTCTCGGCTGGGTTAGTCGACGACAGCAACGTCTTCGAGTGGCAGGTCACAATCATCGGCCCGCCTGACACCCTATAgtgagttggattctctctccaattcgatgcatgcttccatgaatcatctgcctcatccgtgttcatgccatgcgagtg--gagttttttcgtgtatacccgc-

upper sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 2
lower sequence: EDP03036 (Chlamydomonas reinhardtii), 5'ss of exon 2
TCGCGAAGCACCCGGTGGATGGGTTCTCTGCTGGGCTGGTCGACGACAGCAATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcagatcctctccatttca-agcgtgcttccatgccttgtcaagatgaattgcttgtttgttgtgtcggtgccacgagcaatggactacgatggtg
|| | | | |||| |||||||| ||||| ||||| || ||||| || ||||| || ||||||||||||||||||||||| || || || || || || |||| |||  |     |   |       ||  ||| || ||     | |   ||   | |  |      || |   |    |      ||| ||| |  |   
TCACCAGGAACCCCGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATTGGGCCCCCGGAGACACTCTAgtaagtttggaagccatgacgcggcggctcgctgccgtgggcctttactttgtgctacccgggacgagttttcattttgctttgtttgggctagggagag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211533490|gb|FK952750.1|FK952750
EST:     AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACTCTATA                         TGATGGAGGTTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
genomic: AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcaga ... aactttgcagTGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
EST: gi|211533484|gb|FK952744.1|FK952744
EST:     AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACTCTATA                         TGATGGAGGTTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
genomic: AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcaga ... aactttgcagTGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
EST: gi|211533493|gb|FK952753.1|FK952753
EST:     AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACTCTATA                         TGATGGAGGTTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
genomic: AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcaga ... aactttgcagTGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
EST: gi|211530484|gb|FK952736.1|FK952736
EST:     AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATA                         TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
genomic: AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcaga ... aactttgcagTGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
EST: gi|211313830|gb|FL083564.1|FL083564
EST:     AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATA                         TGATGGAGGTTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
genomic: AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcaga ... aactttgcagTGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
EST: gi|211533486|gb|FK952746.1|FK952746
EST:     AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACTCTATA                         TGATGGAGGTTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
genomic: AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcaga ... aactttgcagTGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
EST: gi|211315846|gb|FL083573.1|FL083573
EST:     AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATA                         TGATGGAGGTTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
genomic: AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcaga ... aactttgcagTGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
EST: gi|211530487|gb|FK952739.1|FK952739
EST:     AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACTCTATA                         TGATGGAGGTTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
genomic: AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcaga ... aactttgcagTGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
EST: gi|74240335|gb|DT648249.1|DT648249
EST:     AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATA                         TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
genomic: AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcaga ... aactttgcagTGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
EST: gi|211530485|gb|FK952737.1|FK952737
EST:     AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACTCTATA                         TGATGGAGGTTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
genomic: AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcaga ... aactttgcagTGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
EST: gi|211533485|gb|FK952745.1|FK952745
EST:     AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACTCTATA                         TGATGGAGGTTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA
genomic: AATGTCTTCGAGTGGCAGGTCACCATCATCGGACCGCCTGACACCCTATAgtgagtcaga ... aactttgcagTGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAA