1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCGCGCGCTCACCAACGCCGTCGGCAACCTCGGCATCACCGGGGCATATGCGGAGGCCGTGAAGAAGTTCGGCTACGAGCTCGAGGCCCTCGCGGGGCAGgtgagctctcttaagagtgcttccgcccacaaactggagtatggtttgttaaggctaccttatagtagtatacctgacactgattatttaaatgggatgg...
species | Zea mays |
transcript | GRMZM2G085577_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGAGGCCGTGAAGAAGTTCGGCTACGAGCTCGAGGCCCTCGCGGGGCAG GAAAAAGATGCAGCTCTAGGGAATGGCGGCTTGGGTAGGCTTGCATCTTGCEST: gi|211270977|gb|FL146529.1|FL146529
genomic: CGGAGGCCGTGAAGAAGTTCGGCTACGAGCTCGAGGCCCTCGCGGGGCAGgtgagctctc ... tttttcacagGAAAAAGATGCAGCTCTAGGGAATGGCGGCTTGGGTAGGCTTGCATCTTGC
EST: CGGAGGCCGTGAAGAAGTTCGGCTACGAGCTCGAGGCCCTCGCGGGGCAG GAAAAAGATGCAGCTCTAGGGAATGGCGGCTTGGGTAGGCTTGCATCTTGCEST: gi|29543784|gb|CB604164.1|CB604164
genomic: CGGAGGCCGTGAAGAAGTTCGGCTACGAGCTCGAGGCCCTCGCGGGGCAGgtgagctctc ... tttttcacagGAAAAAGATGCAGCTCTAGGGAATGGCGGCTTGGGTAGGCTTGCATCTTGC
EST: CGGAGGCCGTGAAGAAGTTCGGCTACGAGCTCGAGGCCCTCGCGGGGCAG GAAAAAGATGCAGCTCTAGGGAATGGCGGCTTGGGTAGGCTTGCATCTTGC
genomic: CGGAGGCCGTGAAGAAGTTCGGCTACGAGCTCGAGGCCCTCGCGGGGCAGgtgagctctc ... tttttcacagGAAAAAGATGCAGCTCTAGGGAATGGCGGCTTGGGTAGGCTTGCATCTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCGCGCTCACCAACGCCGTCGGCAACCTCGGCATCACCGGGGCATATGCGGAGGCCGTGAAGAAGTTCGGCTACGAGCTCGAGGCCCTCGCGGGGCAGgtgagctctcttaagagtgcttccgcccacaaactggagtatggtttgttaaggctaccttatagtagtatacctgacactgattatttaaatgggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccca