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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTCGCCATCACTTGTTTCTCCATCAGAGATACCATCGGACCAATATGCGCTTGAATTCGGAGgtgaatttattcatatttctttcattctaagctattgccatatcatggaaatcacacgtctcacgactagatgcagttgtggtatagatagatctgtaaagtttgcttgttaattagttattagagcagtacgcaactacaaacataagttcctttttgtag

Basic information

species Zea mays
transcript GRMZM2G085000_T02
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60343918|gb|DN210891.1|DN210891
EST:     TGTTTCTCCATCAGAGATACCATCGGACCAATATGCGCTTGAATTCGGAG                         CTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAA
genomic: TGTTTCTCCATCAGAGATACCATCGGACCAATATGCGCTTGAATTCGGAGgtgaatttat ... ctttttgtagCTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAA
EST: gi|211469259|gb|FL411595.1|FL411595
EST:     ACCATCGGACCAATATGCGCTTGAATTCGGAG                         CTTGGAAGGTGAASGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAA
genomic: ACCATCGGACCAATATGCGCTTGAATTCGGAGgtgaatttat ... ctttttgtagCTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAA
EST: gi|60394591|gb|DN227461.1|DN227461
EST:     TGTTTCTCCATCAGAGATACCATCGGACCAATATGCGCTTGAATTCGGAG                         CTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAA
genomic: TGTTTCTCCATCAGAGATACCATCGGACCAATATGCGCTTGAATTCGGAGgtgaatttat ... ctttttgtagCTTGGAAGGTGAAGGAGGAATCAAAAATAGGACAGTGCAAACGACCGGAAA