1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTTGTAACGAGGACCTCACATCTGGAGCATGAGAAGTTTGATGCAGCAAAATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAGgttatccacatatccaaaactttccaattgttatctagtttctgtacaagaatttaatccttttgttcttatgcttcggggtcgtgttttttcag
species | Zea mays |
transcript | GRMZM2G084647_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAG GCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGTEST: gi|19058029|gb|BM736696.1|BM736696
genomic: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAGgttatccaca ... gttttttcagGCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGT
EST: AATCGCGGCTAATTGAGCCAGGAGAAAAATTTGGGGAGATATCTTTAAAG GCTCGCAAGACGATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGTEST: gi|71758051|gb|DR955988.1|DR955988
genomic: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAGgttatccaca ... gttttttcagGCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGT
EST: TTTGGGGAGATATCTTTAAAG GCTCGCAAGACAATGGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGTEST: gi|211260424|gb|FL227457.1|FL227457
genomic: TTTGGGGAGATATCTTTAAAGgttatccaca ... gttttttcagGCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGT
EST: AATCGCGNCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAG GCTCGCAAGACAATTGEST: gi|71762540|gb|DR960477.1|DR960477
genomic: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAGgttatccaca ... gttttttcagGCTCGCAAGACAATTG
EST: GAAAAATTTGGGGAGATATCTTTAAAG GCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGTEST: gi|18965102|gb|BM661393.1|BM661393
genomic: GAAAAATTTGGGGAGATATCTTTAAAGgttatccaca ... gttttttcagGCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGT
EST: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAG GCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGTEST: gi|211260422|gb|FL227455.1|FL227455
genomic: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAGgttatccaca ... gttttttcagGCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGT
EST: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAG GCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGNEST: gi|19351346|gb|BM895878.1|BM895878
genomic: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAGgttatccaca ... gttttttcagGCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGT
EST: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAG GCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGTEST: gi|22490267|gb|BU050190.1|BU050190
genomic: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAGgttatccaca ... gttttttcagGCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGT
EST: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAG GCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGT
genomic: AATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAGgttatccaca ... gttttttcagGCTCGCAAGACAATTGCAATGCTTAGTCAGGATTTTATTTATGATGGGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGTAACGAGGACCTCACATCTGGAGCATGAGAAGTTTGATGCAGCAAAATCGCGGCTAATTGAGCGAGGAGAAAAATTTGGGGAGATATCTTTAAAGgttatccacatatccaaaactttccaattgttatctagtttctgtacaagaatttaatccttttgttcttatgcttcggggtcgtgttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT