1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGGGAAGAATGTGCGCCTTCAGAGGAGGGCTAACTTCAGAGTAAAAGCGGCTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgagcttcgggcactcttttatttgaagacgatgtactgtggcctccttcaccaggcactaattgtgttttcgtcttcttctgtatctcag
species | Zea mays |
transcript | GRMZM2G083716_T05 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|148983089|gb|EE029008.2|EE029008
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|149009207|gb|EE041320.2|EE041320
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|148963973|gb|EE015101.2|EE015101
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|149080249|gb|EE169273.2|EE169273
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|149099158|gb|EE185183.2|EE185183
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|148941096|gb|EC885959.2|EC885959
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|211393798|gb|FL326098.1|FL326098
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|148940496|gb|EC885295.2|EC885295
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|78080918|gb|DV509330.1|DV509330
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|148961770|gb|EE012547.2|EE012547
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|149075815|gb|EE164351.2|EE164351
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAGEST: gi|71764884|gb|DR962821.1|DR962821
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGAAGAATGTGCGCCTTCAGAGGAGGGCTAACTTCAGAGTAAAAGCGGCTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgagcttcgggcactcttttatttgaagacgatgtactgtggcctccttcaccaggcactaattgtgttttcgtcttcttctgtatctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC