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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGAAGAATGTGCGCCTTCAGAGGAGGGCTAACTTCAGAGTAAAAGCGGCTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgagcttcgggcactcttttatttgaagacgatgtactgtggcctccttcaccaggcactaattgtgttttcgtcttcttctgtatctcag

Basic information

species Zea mays
transcript GRMZM2G083716_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083716_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g02380.1 (Oryza sativa), 5'ss of exon 2
GGGGAAGAATGTGCGCCTTCAGAGGAGGGCTAACTTCAGAGTAAAAGCGGCTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaag--cgagcttcgggcactcttttatttgaagacgatgtactgtggcct----ccttcaccaggcactaattgtgttttcgtcttcttctgtatctcag
       ||||  ||||||||||||| |   |||||||| |||||||| || |||||| ||||||||||||||||||| || |||||||||||||| |||||||    | |  |||  | || | | |  |  ||        ||| ||        |||| |||||||||| |||  ||| |       ||||  || ||||
ACCACGCAATGCACGCCTTCAGAGGAAGTGCAACTTCAGGGTAAAAGCTGCCAAGGAGTTGTACTTCAACAAGGATGGCTCGGCTATCAAGAAGCTTCAGgtgagctccaaagttcttggacacatcttatcaaattttggtcactatgattcttagccttgaccaggcactcatta-gttat-------ttctacatgtcag

upper sequence: GRMZM2G083716_T04 (Zea mays), 5'ss of exon 2
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 2
GGGGAAGAATGTGCGCCTTCAGAGGAGGGCTAACTTCAGAGTAAAAGC---GGCTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagc-gagcttcgggcactcttttatttgaagacgatgtactgtggcctccttcaccaggcacta-attgtgttttcgtcttcttctgtatctcag-----------------------
     | |||||    || |  ||||          |||  | || ||   ||| |||||  |||| |||||||| ||||| || |||||||||||||| |||||||    | |  |    |||| ||| ||    |     || ||  |    |  ||| | | | | || | | | |  || |  |||  |   ||  |                        
---ACAAAATGTTGTTCTACGAAGGACACGATCTCCCAGGATCAATGCTATGGCAAAGGATTTGTATTTCAACAAAGATGGCTCTGCTATCAAGAAGCTGCAGgtgagtttgtgtgtaaaacact-tttgatcaatatgttctgaacattttgttgattc-ctatgtattagactttctgatcattatctcttaagtcctaacatctttcaatttcctttttcag

upper sequence: GRMZM2G083716_T04 (Zea mays), 5'ss of exon 2
lower sequence: PP1S15_485V6.2 (Physcomitrella patens), 5'ss of exon 1
GGGGAAGAATGTGCGCCTTCAGAGGAGGGCTAACTTCAGA---GTAAAAGCGGCTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaag--cgagcttcgggcactcttttatttgaagacgatgtactgtggcctccttcac-caggcactaattgtgttttcgtcttcttctgtatctcag-
      |||   |||    ||| ||   ||  ||   |     || || || || ||||||||| ||||||| |||||||| || |||||||||||| | ||||||||    | | || ||        | |  |   | |||  | | |||||  | ||    | ||| |      || |      |      |    || | 
---TTTGAACCAGCGGAGGCAGCGGGTTGCGCACCGTACGACGGTTAAGGCTGCGAAGGAGCTGCACTTCAATAAGGATGGCTCTGCTATCAAGAAGATGCAGgtgaatgctgcgttttggatttcaactcaagttgtg-cgaattccggtggctgcattggtgctggctccttggttgatgagagttgtacaagggagtcggt

upper sequence: GRMZM2G083716_T04 (Zea mays), 5'ss of exon 2
lower sequence: EFJ36935 (Selaginella moellendorffii), 5'ss of exon 1
GGGGAAGAATGTGCGCCTTCAGAGGAGGGCTAACTTCAGAGTAAAAGCGGCTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgagcttcgggcactcttttatttgaagacgatgtactgtggcctccttcaccaggcactaattgtgttttcgtcttcttctgtatctcag
   ||     |  |  |      ||  | |   | | ||      |||||| ||| |||||| ||||||||||||||| || || || ||||||||||||||||   ||   | |    ||   |   || ||| |    ||   | |                                                 
CAAGAGCGGCGGACTTCGCTGCCGGGCGCCGGTCGTGAGGACGCGAGCGGCGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAGgtga---gattatggattgctggatggatttaagtctccttataatag-------------------------------------------------

upper sequence: GRMZM2G083716_T04 (Zea mays), 5'ss of exon 2
lower sequence: EFJ33580 (Selaginella moellendorffii), 5'ss of exon 1
GGGGAAGAATGTGCGCCTTCAGAGGAGGGCTAACTTCAGAGTAAAAGCGGCTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgagcttcgggcactcttttatttgaagacgatgtactgtggcctccttcaccaggcactaattgtgttttcgtcttcttctgtatctcag
  |||     |  |  |      ||  | |   | | ||      |||||| ||| |||||| ||||||||||||||| || || || ||||||||||||||||        |   | | |  |  ||     |      |  |  | |  |||  |  ||                                    
CAGGAGCGGCGGACTTCGCTGCCGGGCGCCGGTCGTGAGGACGCGAGCGGCGAAGCAGCTGTTCTTCAACAAGGATGGATCGGCCATGAAGAAGCTCCAGgtgaga------ttatggattgctggatggattggtttgattttaagtctccctataatag------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149009207|gb|EE041320.2|EE041320
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211425622|gb|FL361850.1|FL361850
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|6636998|gb|AW261270.1|AW261270
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211412337|gb|FL345665.1|FL345665
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211529294|gb|FL356728.1|FL356728
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|71764884|gb|DR962821.1|DR962821
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211472722|gb|FL335027.1|FL335027
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|148941096|gb|EC885959.2|EC885959
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211402127|gb|FL345609.1|FL345609
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|149080249|gb|EE169273.2|EE169273
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211322750|gb|FL352371.1|FL352371
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|148959020|gb|EE010533.2|EE010533
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211277762|gb|FL330400.1|FL330400
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|148963973|gb|EE015101.2|EE015101
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|78080918|gb|DV509330.1|DV509330
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211003840|gb|FL306635.1|FL306635
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|148940496|gb|EC885295.2|EC885295
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211393798|gb|FL326098.1|FL326098
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211046076|gb|FL310634.1|FL310634
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211301789|gb|FL326006.1|FL326006
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211509889|gb|FL321846.1|FL321846
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|149099158|gb|EE185183.2|EE185183
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|149075815|gb|EE164351.2|EE164351
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|148983129|gb|EE029060.2|EE029060
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211055913|gb|FL348005.1|FL348005
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211053293|gb|FL359912.1|FL359912
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|148961770|gb|EE012547.2|EE012547
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211419075|gb|FL312381.1|FL312381
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211510315|gb|FL346123.1|FL346123
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|211503202|gb|FL344792.1|FL344792
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|149013866|gb|EE043351.2|EE043351
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
EST: gi|148983089|gb|EE029008.2|EE029008
EST:     CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAG                         ACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG
genomic: CTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgag ... tgtatctcagACTGGAGTCAATAAGCTTGCAGACCTAGTTGGAGTTACACTCGGACCGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGGAAGAATGTGCGCCTTCAGAGGAGGGCTAACTTCAGAGTAAAAGCGGCTAAGGAGCTGTACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTCCAGgtgaagcgagcttcgggcactcttttatttgaagacgatgtactgtggcctccttcaccaggcactaattgtgttttcgtcttcttctgtatctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC