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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATGTCCTGTTTCCAAGGATTTTTCTTCTACCCGGAAGTGGCGTCTTTGCCGCTACAAAACTTCTGCGTCTACCACATCAATCCCCAGGGGCACGAGgtcagtggtgttggttcaatcccaaggtgtgctgcgtctgtatttcgagttggttacttacatgatctttgttgtgtggcttttgttaatagtcttacag...

Basic information

species Zea mays
transcript GRMZM2G083635_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083635_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g10740.1 (Oryza sativa), 5'ss of exon 3
ACATGTCCTGTTTCCAAGGATTTTTCTTCTACCCGGAAGTGGCGTCTTTGCCGCTACAAAACTTCTGCGTCTACCACATCAATCCCCAGGGGCACGAGgtcagtgg---------tgttg---------gttcaatcccaaggtgtgctgcgtctgtatt--tcgagttggttacttacatgatctttgttgtgtggcttttgttaatagtct--tacag
|||||||||| |||||||||||  | || | ||| || ||||||||  ||| ||| || || |||||| | |||||||| ||||| ||||||||||||||| || |         | |||         || || | |||  | ||| ||| |  || |   | |  | |||| || |||||||| || |  ||   | |||||||| | |    | |||
ACATGTCCTGCTTCCAAGGATTGCTGTTTTGCCCCGAGGTGGCGTCGCTGCTGCTCCACAATTTCTGCATATACCACATAAATCCTCAGGGGCACGAGgtctgtagcctgtgtgatattgttcagacatgtccactgccactgcgtgatgcttgagtttctgttggttgggttgctcacatgatcattctcatg--acatttgttaagatttcaatgcag