1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTGgtatgttcacttacctctattgctaatctggctgcatgaaacggtgtaaaaaacattcctttggataatagttttaattgtcgctttgtgatcaaaccttgcag
species | Zea mays |
transcript | GRMZM2G083344_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTG GTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTAEST: gi|50328060|gb|CO523186.1|CO523186
genomic: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTGgtatgttcac ... aaccttgcagGTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTA
EST: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTG GTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTAEST: gi|31909719|gb|CD651060.1|CD651060
genomic: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTGgtatgttcac ... aaccttgcagGTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTA
EST: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTG GTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTAEST: gi|61119701|gb|DN560662.1|DN560662
genomic: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTGgtatgttcac ... aaccttgcagGTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTA
EST: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTG GTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTAEST: gi|28931223|gb|CB334584.1|CB334584
genomic: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTGgtatgttcac ... aaccttgcagGTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTA
EST: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTG GTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTAEST: gi|94477389|gb|EB706347.1|EB706347
genomic: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTGgtatgttcac ... aaccttgcagGTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTA
EST: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTG GTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTAEST: gi|211525181|gb|FL202007.1|FL202007
genomic: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTGgtatgttcac ... aaccttgcagGTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTA
EST: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTG GTATYTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTAEST: gi|28390338|gb|CB250166.1|CB250166
genomic: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTGgtatgttcac ... aaccttgcagGTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTA
EST: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTG GTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTA
genomic: TTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTGgtatgttcac ... aaccttgcagGTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGCCAAGCCCCAGGGATTTGCAGAGAGATACCCAGCTCTTGTCACAGGTTTCTTCTTCTTCTTGTGgtatgttcacttacctctattgctaatctggctgcatgaaacggtgtaaaaaacattcctttggataatagttttaattgtcgctttgtgatcaaaccttgcag
- - - - - - - - - - - - - - - - - CAGCTC