1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGCCGACTGGTATGCTTCCCTCGCCGACCTCTACCAGCAGAAGCTATGGCACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttccttttcctcctctctctctcccccgccgccttcctcgtcttagggtcagttaaggctttgtagatggcttcgttcatagggcggatctcgc...
species | Zea mays |
transcript | GRMZM2G083076_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211119855|gb|FL011675.1|FL011675
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|21987705|gb|BQ779233.1|BQ779233
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211119854|gb|FL011674.1|FL011674
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAARCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTYTGAGEST: gi|148930111|gb|EC872433.2|EC872433
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211120638|gb|FL011688.1|FL011688
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGEST: gi|211120634|gb|FL011684.1|FL011684
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|148972928|gb|EE023946.2|EE023946
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211119858|gb|FL011678.1|FL011678
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|71325798|gb|DR799578.1|DR799578
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|148994797|gb|EE034244.2|EE034244
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211120633|gb|FL011683.1|FL011683
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211119860|gb|FL011680.1|FL011680
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGAEST: gi|148960655|gb|EE011285.2|EE011285
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGA
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211119853|gb|FL011673.1|FL011673
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|149073975|gb|EE162304.2|EE162304
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211120637|gb|FL011687.1|FL011687
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|148999898|gb|EE036942.2|EE036942
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|26558774|gb|CA831009.1|CA831009
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|78103810|gb|DV522238.1|DV522238
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|22472868|gb|BU037348.1|BU037348
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|87156736|gb|DY401525.1|DY401525
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|149111478|gb|EE294982.2|EE294982
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|148960706|gb|EE011347.2|EE011347
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|22473039|gb|BU037504.1|BU037504
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211120632|gb|FL011682.1|FL011682
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|149110373|gb|EE190383.2|EE190383
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCCCTGATTTEST: gi|110220049|gb|EC901947.1|EC901947
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTT
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211120635|gb|FL011685.1|FL011685
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATSATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211119859|gb|FL011679.1|FL011679
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAGEST: gi|211119857|gb|FL011677.1|FL011677
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
EST: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAG ACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
genomic: ACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttcc ... tcttctacagACCGGAGACACTATCATTCAGCTCTACAACAATTTCATCACTGATTTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGACTGGTATGCTTCCCTCGCCGACCTCTACCAGCAGAAGCTATGGCACCAGCTCACCCTCAAGCTCGACCAATTCCTACAGCTCCAGGCCGCACAGgttcgcttccttttcctcctctctctctcccccgccgccttcctcgtcttagggtcagttaaggctttgtagatggcttcgttcatagggcggatctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcctc