1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGTCCATCAGTCACATGCAGGAAGCCTCTCCAATCTGACAATACTTCTCACAGTCAAGAAGAGGACTCATATTCTGTCACTTCTTCgtatccttttttcttttcaaatattgatcatattaattttccagtggatcttattgttctgtctgtttagtgtctcctttttctttaatattttatgcat...
species | Zea mays |
transcript | GRMZM2G082809_T02 |
intron # | 2 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: GACAATACTTCTCACAGTCAAGAAGAGGACTCATATTCTGTCACTTCTTC AACTGTAACTTCAGCGAGAGCTGGAAAAACTAAGAAGACAACGGTTGCTGTEST: gi|6827765|gb|AW331408.1|AW331408
genomic: GACAATACTTCTCACAGTCAAGAAGAGGACTCATATTCTGTCACTTCTTCgtatcctttt ... ctgtgtacagAACTGTAACTTCAGCGAGAGCTGGAAAAACTAAGAAGACAACGGTTGCTGT
EST: GACAATACTTCTCACAGTCAAGAAGAGGACTCATATTCTGTCACTTCTTC AACTGTAACTTCAGCGAGAGCTGGAAAAACTAAGAAGACAACTGTTGCTGT
genomic: GACAATACTTCTCACAGTCAAGAAGAGGACTCATATTCTGTCACTTCTTCgtatcctttt ... ctgtgtacagAACTGTAACTTCAGCGAGAGCTGGAAAAACTAAGAAGACAACGGTTGCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCCATCAGTCACATGCAGGAAGCCTCTCCAATCTGACAATACTTCTCACAGTCAAGAAGAGGACTCATATTCTGTCACTTCTTCgtatccttttttcttttcaaatattgatcatattaattttccagtggatcttattgttctgtctgtttagtgtctcctttttctttaatattttatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA