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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACATGGGCTACTTTAGTTGCTGGGTTCTTCATGCTGCTTGCGCTTTCGCTCTCCACGTACCTGATATTTGAGCATCTCTCAGCATACAACAATCCAGAGgtttctagtttctacttttgcatcctatcttaatttttgcataattcggtttatcagaactatggtaaagcataatttttactgttttaggttctgttctacttgtacag

Basic information

species Zea mays
transcript GRMZM2G082181_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082181_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g47530.1 (Oryza sativa), 5'ss of exon 2
CACATGGGCTACTTTAGTTGCTGGGTTCTTCATGCTGCTTGCGCTTTCGCTCTCCACGTACCTGATATTTGAGCATCTCTCAGCATACAACAATCCAGAGgtttctagtttctacttttgcatcctatcttaatttttgcataattcggtttatcagaactatggtaaagcataatttttactgttttaggttct-gttctacttgtacag
 || ||||| ||| | ||||| || |||||| |||||||  | ||||| ||||| |  ||||| ||||||||||| |||||||| ||||| ||||||||||| | ||  | |   |  |||  | | || | | ||||  | |            ||  || | |  |||||||   |    | |||| ||| || |||   ||| | |||
AACTTGGGCCACTCTGGTTGCGGGATTCTTCGTGCTGCTCTCTCTTTCCCTCTCTATATACCTTATATTTGAGCACCTCTCAGCGTACAATAATCCAGAGgtatgtacatccctttcctgcgccttctcatcaattttaaaaa-----------tagttctgttgacaagcatacactcactttttttgggtccttgtttaccttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76915407|gb|DV165971.1|DV165971
EST:     TCTCCACGTACCTGATATTTGAGCATCTCTCAGCATACAACAATCCAGAG                         GAACAAAAATTTGTACTGGGTGTTATTCTCATGGTCCCTTGCTATGCAATT
genomic: TCTCCACGTACCTGATATTTGAGCATCTCTCAGCATACAACAATCCAGAGgtttctagtt ... acttgtacagGAACAAAAATTTGTACTGGGTGTTATTCTCATGGTCCCTTGCTATGCAATT
EST: gi|22491186|gb|BU051109.1|BU051109
EST:     TCTCCACGTACCTGATATTTGAGCATCTCTCATCATACAACAATCCAGAG                         GAACAAAAATTTGTACTGGGTGTTATTCTCATGGTCCCTTGCTATGCAATT
genomic: TCTCCACGTACCTGATATTTGAGCATCTCTCAGCATACAACAATCCAGAGgtttctagtt ... acttgtacagGAACAAAAATTTGTACTGGGTGTTATTCTCATGGTCCCTTGCTATGCAATT
EST: gi|71770031|gb|DR967968.1|DR967968
EST:     TCTCCACGTACCTGATATTTGAGCATCTCTCAGCATACAACAATCCAGAG                         GAACAAAAATTTGTACTGGGTGTTATTCTCATGGTCCCTTGCTATGCAATT
genomic: TCTCCACGTACCTGATATTTGAGCATCTCTCAGCATACAACAATCCAGAGgtttctagtt ... acttgtacagGAACAAAAATTTGTACTGGGTGTTATTCTCATGGTCCCTTGCTATGCAATT
EST: gi|78089544|gb|DV517918.1|DV517918
EST:     TCTCCACGTACCTGATATTTGAGCATCTCTCAGCATACAACAATCCAGAG                         GAACAAAAATTTGTACTGGGTGTTATTCTCATGGTCCCTTGCTATGCAATT
genomic: TCTCCACGTACCTGATATTTGAGCATCTCTCAGCATACAACAATCCAGAGgtttctagtt ... acttgtacagGAACAAAAATTTGTACTGGGTGTTATTCTCATGGTCCCTTGCTATGCAATT
EST: gi|87152306|gb|DY397095.1|DY397095
EST:     TCTCCACGTACCTGATATTTGAGCATCTCTCATCATACAACAATCCAGAG                         GAACAAAAATTTGTACTGGGTGTTATTCTCATGGTCCCTTGCTATGCAATT
genomic: TCTCCACGTACCTGATATTTGAGCATCTCTCAGCATACAACAATCCAGAGgtttctagtt ... acttgtacagGAACAAAAATTTGTACTGGGTGTTATTCTCATGGTCCCTTGCTATGCAATT