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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGCGCCGAGCGCGAGCAGCTGGCGGCCGCCGTGGCGTCGGCCGTCAGCGTCAGGACCCCTAGCGACGTCGCCACCGTCACGGCCGCCGCCGCCACAGgttcgacaccacaacaaaccgagcctgccgcacagcggtgggatcgagcatcagagtgacgtttctgtttggtcttctgccgctgcag

Basic information

species Zea mays
transcript GRMZM2G081977_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G815449_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g41140.1 (Oryza sativa), 5'ss of exon 3
CTGGGCGCCGAGCGCGAGCAGCTGGCGGCCGCCGTGGCGTCGGCCGTCAGCGTCAGGACCCCTAGCGACGTCGCCACCGTCACGGCCGCCGCCGCCACAGgttcg-acaccacaacaaaccgagcctgccgcacagcggtgggatcgagcatcagagtgacgtttctgtttggtcttctgccgctgcag
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CTCGGCGCCGAGCGCGACCACCTCGCCGCCGCCATCGCCTCCGCCGTCAACGTCCGCACACCCGGCGACATCGTCACCATCACCGCCGCCGCCGCCACCGgttcgcgttccacccccatcctcatc-gtctc-cggcga-gccaccgtgactgatcacgccatctctctacattgcattgcag------