1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagatttctctgctgtaaaatgtccccttgcggttttggatgaccagagagtcctgaaaactgtgatgaatctagaagggtaccgtttatttttt...
species | Zea mays |
transcript | GRMZM2G081812_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAAGTAGAAGTGCCTCAGGTAAGGEST: gi|31361671|gb|CD446028.1|CD446028
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCC-AAAGTAGAAGTGCCTCAGGTAAGG
EST: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGCEST: gi|71325031|gb|DR799198.1|DR799198
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGCEST: gi|24462593|gb|BM660124.1|BM660124
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: ATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGCEST: gi|74034907|gb|DT535397.1|DT535397
genomic: ATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGTCTCAGGTAAGGCEST: gi|26457010|gb|CA828593.1|CA828593
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTTCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGCEST: gi|211108805|gb|FL115292.1|FL115292
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGCEST: gi|22818963|gb|BU499053.1|BU499053
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTTCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGCEST: gi|211109705|gb|FL115302.1|FL115302
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGCEST: gi|87155380|gb|DY400169.1|DY400169
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTTCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGCEST: gi|26457257|gb|CA828840.1|CA828840
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTTCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGCEST: gi|29946767|gb|CB816315.1|CB816315
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGGCTCAGGTAAGGCEST: gi|32910104|gb|CF014916.1|CF014916
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGCEST: gi|211108807|gb|FL115294.1|FL115294
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAEST: gi|26559878|gb|CA832113.1|CA832113
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCA
EST: TGGAATGCAGGGAATTCCTTCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGCEST: gi|22543269|gb|BU093707.1|BU093707
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
EST: TGGAATGCAGGGAATTCCTTCGCATGTATTGGCTGCTCATTATGGAGAAG AGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAG-GCCTCAGGTAAGGC
genomic: TGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagat ... ccacgtgcagAGGAAGACCCTTCAACAAAGGTACCCAAAGTAGAAGTGCCTCAGGTAAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCCTAATGCAAAGCCTGATAGGGAGTCAACGGAGATAGAGATATTTGGAATGCAGGGAATTCCTGCGCATGTATTGGCTGCTCATTATGGAGAAGgtatgcagatttctctgctgtaaaatgtccccttgcggttttggatgaccagagagtcctgaaaactgtgatgaatctagaagggtaccgtttatttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA