1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGTGTAAAGATTCCTACTCAGGTAGAGACTCTTGTAAAGGGCACTGCAGCGGTTGCTGAACCAGAATACAAGCAGATCCCAGATGTAGATTACCTACAGgtacttttttctgatcattttatactgaactgtttttttattaaaatttaagtttaatggttcttaaacctttcaaagttggtgtgatacaatcagaaatccaataatgaatgctacttagcatgtatgagctttatgaattgatttatcctatgaagtggactcatttattttgtggtcatgaag
species | Zea mays |
transcript | GRMZM2G081653_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAGATCCCAGATGTAGATTACCTACAG GAGCTGCTGGCTATTCAGCAGCAAGGACCTCGTGCAATAGGTTTCTTTGGAEST: gi|78079282|gb|DV507694.1|DV507694
genomic: GCAGATCCCAGATGTAGATTACCTACAGgtactttttt ... ggtcatgaagGAGCTGCTGGCTATTCAGCAGCAAGGACCTCGTGCAATAGGTTTCTTTGGA
EST: CGGTTGCTGAACCAGAATACAAGCAGATCCCAGATGTAGATTACCTACAG GAGCTGCTGGCTATTCAGCAGCAAGGAEST: gi|149090139|gb|EE179439.2|EE179439
genomic: CGGTTGCTGAACCAGAATACAAGCAGATCCCAGATGTAGATTACCTACAGgtactttttt ... ggtcatgaagGAGCTGCTGGCTATTCAGCAGCAAGGA
EST: AGCAGATCCCAGATGTAGATTACCTACAG GAGCTGCTGGCTATTCAGCAGCAAGGACCTCGTGCAATAGGTTTCTTTGGAEST: gi|78079193|gb|DV507605.1|DV507605
genomic: AGCAGATCCCAGATGTAGATTACCTACAGgtactttttt ... ggtcatgaagGAGCTGCTGGCTATTCAGCAGCAAGGACCTCGTGCAATAGGTTTCTTTGGA
EST: CGGTTGCTGAACCAGAATACAAGCAGATCCCAGATGTAGATTACCTACAG GAGCTGCTGGCTATTCAGCAGCAAGGACCTCGTGCAATAGGTTTCTTTGGA
genomic: CGGTTGCTGAACCAGAATACAAGCAGATCCCAGATGTAGATTACCTACAGgtactttttt ... ggtcatgaagGAGCTGCTGGCTATTCAGCAGCAAGGACCTCGTGCAATAGGTTTCTTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGTAAAGATTCCTACTCAGGTAGAGACTCTTGTAAAGGGCACTGCAGCGGTTGCTGAACCAGAATACAAGCAGATCCCAGATGTAGATTACCTACAGgtacttttttctgatcattttatactgaactgtttttttattaaaatttaagtttaatggttcttaaacctttcaaagttggtgtgatacaatcagaaatccaataatgaatgctacttagcatgtatgagctttatgaattgatttatcctatgaagtggactcatttattttgtggtcatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG