1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacggagaccatttatcgaggtttcttctgtcttttgtttgctgatagcaaatttgatggcaattatgaacatctttgttgataaccttattgtaacttgcatttggcag
species | Zea mays |
transcript | GRMZM2G081642_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG CTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|26455576|gb|CA827159.1|CA827159
genomic: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacgg ... catttggcagCTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG CTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|37424864|gb|CF650166.1|CF650166
genomic: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacgg ... catttggcagCTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG CTTACAAATGCEST: gi|21481543|gb|BQ578226.1|BQ578226
genomic: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacgg ... catttggcagCTTACAAATGC
EST: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG CTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|148941968|gb|EC886955.2|EC886955
genomic: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacgg ... catttggcagCTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG CTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|71436402|gb|DR817452.1|DR817452
genomic: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacgg ... catttggcagCTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG CTTACAAATGCAAGAGGCTATTTCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|149069709|gb|EE158095.2|EE158095
genomic: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacgg ... catttggcagCTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG CTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|101394355|gb|EB819112.1|EB819112
genomic: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacgg ... catttggcagCTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG CTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|149041290|gb|EE046926.2|EE046926
genomic: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacgg ... catttggcagCTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCT
EST: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAG CTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCTEST: gi|213187018|gb|FM194143.1|FM194143
genomic: AGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacgg ... catttggcagCTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCT
EST: GAAAGAGTTTATCCNNNGCTGGACGTAAATACAAACGACTAGACTTGGAG CTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCT
genomic: GAAAGAGTTTATCC-TTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacgg ... catttggcagCTTACAAATGCAAGAGGCTATATCTTAAAATGCAGCCACTATGTTCCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAGAATATAATCCAGATCAGTATCTATGGGAGAAAGAGTTTATCCTTGCTGGACGTAAATACAAACGACTAGACTTGGAGgcaagtacggagaccatttatcgaggtttcttctgtcttttgtttgctgatagcaaatttgatggcaattatgaacatctttgttgataaccttattgtaacttgcatttggcag
- - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG