1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGGgtacgcacctaccttatctcttttcatccattcggggagaaattcagctgaaagtttcatgtgatttgcactcactgtttag
species | Zea mays |
transcript | GRMZM2G081462_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGG GTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTTEST: gi|149097284|gb|EE183107.2|EE183107
genomic: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGGgtacgcacct ... cactgtttagGTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTT
EST: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGG GTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTTEST: gi|84969707|gb|DW468136.1|DW468136
genomic: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGGgtacgcacct ... cactgtttagGTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTT
EST: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGG GTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTTEST: gi|76016942|gb|DT944112.1|DT944112
genomic: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGGgtacgcacct ... cactgtttagGTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTT
EST: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGG GTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTTEST: gi|15323476|gb|BI478494.1|BI478494
genomic: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGGgtacgcacct ... cactgtttagGTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTT
EST: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGG GTTCTTGAACAAGGGGCTGTCTGACTTCAACTGGGCGCTGGACCTGGGGTTEST: gi|211408498|gb|FL069298.1|FL069298
genomic: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGGgtacgcacct ... cactgtttagGTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTT
EST: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCAGG GTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTTEST: gi|50325243|gb|CO520369.1|CO520369
genomic: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGGgtacgcacct ... cactgtttagGTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTT
EST: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGG GTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTTEST: gi|13557965|gb|BG549321.1|BG549321
genomic: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGGgtacgcacct ... cactgtttagGTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTT
EST: TCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGG GCTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTEST: gi|78107168|gb|DV525586.1|DV525586
genomic: TCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGGgtacgcacct ... cactgtttagG-TTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGT
EST: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGG GTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTT
genomic: GTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGGgtacgcacct ... cactgtttagGTTCTTGAACAAGGGGCTGTCTGACTTCAACTTGGCGCTGGACCTGGGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACCAACCCGGTCGTGGCGGAGATCTTCTCGCTCATGTCAAGGGACGAGGCGCGCCATGCTGGgtacgcacctaccttatctcttttcatccattcggggagaaattcagctgaaagtttcatgtgatttgcactcactgtttag
- - - - - - - - - - GGAGAT
- - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG