Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCTTATCTCGCGGATGATCCGTCCCTGAAGAGCGCCCTCCCCATCGATCCGGCGACCGATCACATCTTCCATATCACCAAGGACGGCGTGCTCCTATGgtacgtttcggatgtactttgtgcttcgatccgaaactgtgatgcagtctgacagggttttcttgtttactgttgttccatccag

Basic information

species Zea mays
transcript GRMZM2G081380_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081380_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g33080.1 (Oryza sativa), 5'ss of exon 2
ACGCTTATCTCGCGGATGATCCGTCCCTGAAGAGCGCCCTCCCCATCGATCCGGCGACCGATCACATCTTCCATATCACCAAGGACGGCGTGCTCCTATGgtacgtttc--ggatgtactttgtg--------cttcgatccgaa---actgtgatgcagtctgacagggttttcttgtttactgttgttccatccag-------------
|||| || ||||| || ||||| | ||| || | ||| ||||||||||||||||| ||||||||| |||||||  ||||||||||||||||||||||||||| | ||||        |  |  |          |||||  |  |   |||   |||   || ||   |  ||||||  || || || ||||  || |             
ACGCCTACCTCGCCGAGGATCCCTTCCTCAACACCGCGCTCCCCATCGATCCGGCCACCGATCACCTCTTCCACCTCACCAAGGACGGCGTGCTCCTATGgtccatttcctcatctcatctcatcgatcgccttttcgactccgatccactcacatgtgctccgatctgactttctttctttctctttttcccccctgctttttgattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149096922|gb|EE182720.2|EE182720
EST:     CCGGCGACCGATCACATCTTCCATATCACCAAGGACGGCGTGCTCCTATG                         CAAACTCATCAACTTGGCTGTACCGGGCACCATCGATGAGCGAGCCATCAA
genomic: CCGGCGACCGATCACATCTTCCATATCACCAAGGACGGCGTGCTCCTATGgtacgtttcg ... ttccatccagCAAACTCATCAACTTGGCTGTACCGGGCACCATCGATGAGCGAGCCATCAA
EST: gi|71313366|gb|DR793232.1|DR793232
EST:     CCGGCGACCGATCACATCTTCCATATCACCAAGGACGGCGTGCTCCTATG                         CAAACTCATCAACTTGGCTGTACCGGGCACCATCGATGAGCGAGCCATNCA
genomic: CCGGCGACCGATCACATCTTCCATATCACCAAGGACGGCGTGCTCCTATGgtacgtttcg ... ttccatccagCAAACTCATCAACTTGGCTGTACCGGGCACCATCGATGAGCGAGCCAT-CA
EST: gi|148970201|gb|EE021132.2|EE021132
EST:     CCGGCGACCGATCACATCTTCCATATCACCAAGGACGGCGTGCTCCTATG                         CAAACTCATCAACTTGGCTGTACCGGGCACCATCGATGAGCGAGCCATCAA
genomic: CCGGCGACCGATCACATCTTCCATATCACCAAGGACGGCGTGCTCCTATGgtacgtttcg ... ttccatccagCAAACTCATCAACTTGGCTGTACCGGGCACCATCGATGAGCGAGCCATCAA
EST: gi|149081443|gb|EE170567.2|EE170567
EST:     CCGGCGACCGATCACATCTTCCATATCACCAAGGACGGCGTGCTCCTATG                         CAAACTCATCAACTTGGCTGTACCGGGCACCATCGATGAGCGAGCCATCAA
genomic: CCGGCGACCGATCACATCTTCCATATCACCAAGGACGGCGTGCTCCTATGgtacgtttcg ... ttccatccagCAAACTCATCAACTTGGCTGTACCGGGCACCATCGATGAGCGAGCCATCAA