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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattcttcttcttcttctcgtctcgtgcttccatctcactatttccattccaacttgatccttatccatccagacacggatgttcgttccaaagctgacctttctccccgccacgtgttcttcctcccag

Basic information

species Zea mays
transcript GRMZM2G080375_T04
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080375_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 2
ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattcttcttcttcttctcgtctcgtgcttccatctcactatttccattccaacttgatccttatcca-tccagacacggatgttcgttccaaagctgacctttctccccgccacgtgttcttcctcccag--------
|| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||    | |||| |    |   |  ||  || |   |||||   || |  ||  ||    | ||||  ||||  || |      || ||| |||||||| | | |||||||| || | ||            
ACTTACCCGAATCCTCTGCAAGACAACCCGGCTTATTCAGTCGTCAAgtaagaattctcct----cgtctcctgctctaaattaattccatttgatccatgagaattccattattccatagtccaaccacgcttggt-acaaaaaggcttacctttcttcacaccacgtgtgctccttcttcttcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148980657|gb|EE027275.2|EE027275
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|149101214|gb|EE187325.2|EE187325
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAG