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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattcttcttcttcttctcgtctcgtgcttccatctcactatttccattccaacttgatccttatccatccagacacggatgttcgttccaaagctgacctttctccccgccacgtgttcttcctcccag

Basic information

species Zea mays
transcript GRMZM2G080375_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080375_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g09570.1 (Oryza sativa), 5'ss of exon 2
ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattcttcttcttcttctcgtctcgtgcttccatctcactatttccattccaacttgatccttatcca-tccagacacggatgttcgttccaaagctgacctttctccccgccacgtgttcttcctcccag--------
|| |||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||    | |||| |    |   |  ||  || |   |||||   || |  ||  ||    | ||||  ||||  || |      || ||| |||||||| | | |||||||| || | ||            
ACTTACCCGAATCCTCTGCAAGACAACCCGGCTTATTCAGTCGTCAAgtaagaattctcct----cgtctcctgctctaaattaattccatttgatccatgagaattccattattccatagtccaaccacgcttggt-acaaaaaggcttacctttcttcacaccacgtgtgctccttcttcttcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234373|gb|DT642287.1|DT642287
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|211522284|gb|FL320492.1|FL320492
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|148940563|gb|EC885365.2|EC885365
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|211143668|gb|FL321938.1|FL321938
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|149076118|gb|EE164702.2|EE164702
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|148941151|gb|EC886025.2|EC886025
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|18661967|gb|BM501673.1|BM501673
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|76914829|gb|DV165709.1|DV165709
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|37416938|gb|CF646120.1|CF646120
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|149087521|gb|EE176918.2|EE176918
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|76290797|gb|DV030365.1|DV030365
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|149069151|gb|EE157880.2|EE157880
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGGCAA                         GCAGTATTTCGTCCACCCAGACGACACCGTCACGCACAAGATT
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAGATT
EST: gi|149111238|gb|EE294735.2|EE294735
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|76913985|gb|DV165359.1|DV165359
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|78078027|gb|DV506442.1|DV506442
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
EST: gi|148935767|gb|EC879810.2|EC879810
EST:     ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAA                         GCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG
genomic: ACATACCCGAATCCTCTCCAAGACAACCCGGCGTATTCAGTCGTCAAgtatgaattc ... ttcctcccagGCAGTATTTCGTCAACCCAGACGACACCGTCACGCAGAAG