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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTACGTGCGGAGCTCGAGAGGCGTGCAGCTCTTCACCTGCGGCTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatcaagccacaccgctgcaggctgctgcactgcacgcgttgttgagcttagctgtttcctgtttcagttactactatacctgttatctttccattgcgttggtgtcgtttctcattaacagctctttcggttactactcgttctcattgcgttggtgtcgtttctcgccgcag

Basic information

species Zea mays
transcript GRMZM2G080320_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G080320_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g21300.1 (Oryza sativa), 5'ss of exon 2
GAGTACGTGCGGAGCTCGAGAGGCGTGCAGCTCTTCACCTGCGGCTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGg--------tagtaatcaagccacaccgctgcaggctgctgcac-tgcac-gcgttgttgagcttagctgtttcctgtttcagttactactatacctgttatctttccattgcgttggtgtcgtt-tctcattaacagctctttcggttactactcgttctcattgcgttggtgtcgtttctcgccgcag
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||     | ||||||||||| ||||||||||||||||||||        ||||| |  |  || | | |   ||   ||||||  ||||  | |     || |  | |          ||    |     | |  |||  || |||  |  |    |   | ||| ||   ||   ||     | | ||  |  | ||| |  ||  ||  |||| |||  ||       
GAGTACGTGCGGAACTCGAGAGGGGTGCAGCTCTTCACCTGCGGCTGGCTGCCCGCCAAAACGTCGCCCAAGGCCCTCGTCTTCCTCTGCCACGgtacgtatgtagtactagattcaaagctcgatagctagctgcatatgcattgagcaaaagaaccaaccgagaatgaactttgtctttgtttctctctgaaatttttagacggaaacgagattgttctcatgtttcgaggctaattgattcttgtt-gttttgtttctgt--gtgttgttcatcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101386310|gb|EB815175.1|EB815175
EST:     CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACG                         GCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
genomic: CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatca ... ctcgccgcagGCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
EST: gi|76933105|gb|DV173322.1|DV173322
EST:     CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACG                         GCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
genomic: CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatca ... ctcgccgcagGCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
EST: gi|76937527|gb|DV175177.1|DV175177
EST:     CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACG                         GCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
genomic: CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatca ... ctcgccgcagGCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
EST: gi|71442135|gb|DR823185.1|DR823185
EST:     CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACG                         GCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
genomic: CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatca ... ctcgccgcagGCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
EST: gi|71324668|gb|DR799031.1|DR799031
EST:     CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACG                         GCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
genomic: CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatca ... ctcgccgcagGCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
EST: gi|88756708|gb|DY540849.1|DY540849
EST:     CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACG                         GCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
genomic: CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatca ... ctcgccgcagGCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
EST: gi|76016400|gb|DT943570.1|DT943570
EST:     CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACG                         GCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
genomic: CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatca ... ctcgccgcagGCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
EST: gi|148949770|gb|EC895253.2|EC895253
EST:     CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACG                         GCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
genomic: CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatca ... ctcgccgcagGCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
EST: gi|149075325|gb|EE163832.2|EE163832
EST:     CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACG                         GCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
genomic: CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatca ... ctcgccgcagGCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
EST: gi|50331619|gb|CO526745.1|CO526745
EST:     CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACG                         GCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
genomic: CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatca ... ctcgccgcagGCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
EST: gi|50335883|gb|CO531009.1|CO531009
EST:     CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACG                         GCTACGGCATGGAGTGCAGTGGCTTCATGAGAG
genomic: CTGGCTGCCCGCTGCCGCATCGCCCAAGGCGCTCGTCTTCCTCTGCCACGgtagtaatca ... ctcgccgcagGCTACGGCATGGAGTGCAGTGGCTTCATGAGAG