1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACACTAGGCCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactttgactagccctgtttttagtattttatttcaactattgactataatacatgtgttcttctcag
species | Zea mays |
transcript | GRMZM2G079538_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|211169879|gb|FL077608.1|FL077608
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGEST: gi|211325989|gb|FL407943.1|FL407943
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|211233035|gb|FK998528.1|FK998528
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGEST: gi|148943959|gb|EC889039.2|EC889039
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|31355469|gb|CD439826.1|CD439826
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAGCTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|31355590|gb|CD439947.1|CD439947
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAGCTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|78111553|gb|DV529950.1|DV529950
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGEST: gi|149015063|gb|EE044815.2|EE044815
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|149009740|gb|EE041651.2|EE041651
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGEST: gi|78103875|gb|DV522298.1|DV522298
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|148958216|gb|EC904424.2|EC904424
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|148991485|gb|EE033000.2|EE033000
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGEST: gi|149081048|gb|EE170148.2|EE170148
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|211169872|gb|FL077601.1|FL077601
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|148931436|gb|EC874404.2|EC874404
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|31358640|gb|CD442997.1|CD442997
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAGCTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|211230977|gb|FK998519.1|FK998519
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGEST: gi|148978727|gb|EE026283.2|EE026283
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|149014456|gb|EE044070.2|EE044070
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|149003557|gb|EE038930.2|EE038930
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|211321201|gb|FL380429.1|FL380429
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGEST: gi|31353408|gb|CD437765.1|CD437765
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAGCTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|211169881|gb|FL077610.1|FL077610
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGEST: gi|67033243|gb|CO461992.1|CO461992
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAGEST: gi|211169620|gb|FL396011.1|FL396011
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
EST: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAG CTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCCGAGAAG
genomic: CCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactt ... ttcttctcagCTTTGGTTTCTGCTACATCTGAATGCTCAAATCTGCC--G-AG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACTAGGCCTCCTAAGGAGTTATGCACATGTCAGAAGCTACAACAGTCAACTTTCAGgttgttactttgactagccctgtttttagtattttatttcaactattgactataatacatgtgttcttctcag
- - - - - - - AAGGAG
- - - - - - - - - - - - - - - - AGAAGC