1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CATTACAATACTCATTAATTTAGCCAAGTCGATGAATAGGCTTGTTGCCGAAGAAGCTGCTGGTGGCCTTTGGAATCTCTCTGTAGGCGAGGACCACAAGgttgttattctttggatgctgcattgtataacttgttattggggtaattttgtaataattcattggttgcacttcttcag
species | Zea mays |
transcript | GRMZM2G079031_T03 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGAGGACCACAAG GCGGCTATTGCAGTATCTGGTGGCATTAAGGCCCTGGTCGATCTAATATTTEST: gi|31350103|gb|CD434460.1|CD434460
genomic: CGAGGACCACAAGgttgttattc ... acttcttcagGCGGCTATTGCAGTATCTGGTGGCATTAAGGCCCTGGTCGATCTAATATTT
EST: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCTGTAGGCGAGGACCACAAG GCGGCTATTGCAGTATCTGGTGGCATTAAGGCCCTGGTCGATCTAATATTTEST: gi|67028473|gb|CO457222.1|CO457222
genomic: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCTGTAGGCGAGGACCACAAGgttgttattc ... acttcttcagGCGGCTATTGCAGTATCTGGTGGCATTAAGGCCCTGGTCGATCTAATATTT
EST: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCTGTAGGCGAGGAC-ACAAG GCGGCTATTGCAGTATCTGGTGGCATTAAGGCCCTGGTCGATCTAATATTT
genomic: AAGAAGCTGCTGGTGGCCTTTGGAATCTCTCTGTAGGCGAGGACCACAAGgttgttattc ... acttcttcagGCGGCTATTGCAGTATCTGGTGGCATTAAGGCCCTGGTCGATCTAATATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTACAATACTCATTAATTTAGCCAAGTCGATGAATAGGCTTGTTGCCGAAGAAGCTGCTGGTGGCCTTTGGAATCTCTCTGTAGGCGAGGACCACAAGgttgttattctttggatgctgcattgtataacttgttattggggtaattttgtaataattcattggttgcacttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG