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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATTCTGAAGAACACAATTTATGATTACTTTGACAAGAACTTCACTGGACAGTTTGACAAGTTTGATGACCTTTGCCCCCTTGTTTCTGTCAAGCAGgtatgaggtacaaattgcatgtagtaatatttagtggatatatgctattctgcttctgctaatgatcaactgcagcagcagtatacccttaacaaagtac...

Basic information

species Zea mays
transcript GRMZM2G078756_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078756_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os12g34860.1 (Oryza sativa), 5'ss of exon 2
TGGGATTCTGAAGAACACAATTTATGATTACTTTGACAAGAACTTCACTGGACAGTTTGACAAGTTTGATGACCTTTGCCCCCTTGTTTCTGTCAAGCAGgtatgaggtacaaattgcatgtagtaatatttagtggatatatgctattctgcttctgctaatgatcaactgcagcagcagtatacccttaacaaagtac--------------------------------------------------------------------------------------------
 ||||||||||||||||| ||||| || |||||||||||||| ||| ||||  | ||| ||||||| |||||||| ||||| ||||||||| ||||||||||||||| ||  | |||    |  |  | || |   | | ||| |  | |   || |||| ||  || ||||    ||     | | |||     | |                                                                                              
AGGGATTCTGAAGAACACTATTTACGACTACTTTGACAAGAATTTCTCTGGGAACTTTAACAAGTTCGATGACCTCTGCCCTCTTGTTTCTATCAAGCAGgtatgagttagcagttg-gcctgatg-tgttcaactgct-tattccttcccttttgtgctgatt-tccactgggctagtgaatttcgctttgtgcacttgtttttctttttttcagattctcgcacaccttgtgtaacagtgtactttgaaccatatgattattgctgaccccaaggtcatgcttgctgcag