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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACGCGTGGATCTAACTTGCGGTCGGCGTCCTCCTTCCCGTCCCGCGCCTCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcgagatgccccccttacctcccttcgtttcctgcccgtcgtgtccgcggtccgcctatctattcccttctggttgcctcggcgacctttcttt...

Basic information

species Zea mays
transcript GRMZM2G077607_T05
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148986662|gb|EE030442.2|EE030442
EST:     CCGCCTCCACCGCTGCCACCGGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: CCGCCTCCACCGCTGCCACC-GGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|71766162|gb|DR964099.1|DR964099
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|149001201|gb|EE038471.2|EE038471
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|91055118|gb|EB165536.1|EB165536
EST:     GCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: GCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|148939787|gb|EC884487.2|EC884487
EST:     CGCTGCCACCGGCAGCCACCACCCCGCCCCACCACCACAG                         GACCGTGGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: CGCTGCCACCGGCAGCCACCA-CCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|78080307|gb|DV508719.1|DV508719
EST:     GCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCTCCGGACAAGAC
genomic: GCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|148956370|gb|EC902184.2|EC902184
EST:     CCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCCACCACCACAG                         GGCCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: CCGCCTCCACCGCTGCCACCGGCAGCCACCACCCG-CCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|149104291|gb|EE289730.2|EE289730
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|71775438|gb|DR973316.1|DR973316
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|78110504|gb|DV528914.1|DV528914
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|149101066|gb|EE187165.2|EE187165
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|76281284|gb|DV020852.1|DV020852
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|93283758|gb|EB676022.1|EB676022
EST:     AGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: AGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|149080427|gb|EE169450.2|EE169450
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|149110620|gb|EE294219.2|EE294219
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|71440678|gb|DR821728.1|DR821728
EST:     CCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: CCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|71317318|gb|DR795348.1|DR795348
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|71760606|gb|DR958543.1|DR958543
EST:     CCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: CCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|148928285|gb|EE284886.2|EE284886
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|149102953|gb|EE288307.2|EE288307
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|71433799|gb|DR814849.1|DR814849
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|148945559|gb|EC890812.2|EC890812
EST:     CGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: CGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|148987354|gb|EE031196.2|EE031196
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|101402571|gb|EB822834.1|EB822834
EST:     TCCGCTTCCACCGCTGCCACCGGCAGCGACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|14244188|gb|BG842258.2|BG842258
EST:     CCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: CCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|91878131|gb|EB408088.1|EB408088
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|101395953|gb|EB819903.1|EB819903
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|149021603|gb|EE154455.2|EE154455
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|71756828|gb|DR954765.1|DR954765
EST:     CACCACCCGCCCCACCACCACAG                         GGCCGTCGAGGATCGATCAGGC-GGCAGAAAGCGGTCGTCGCCGGACAAGA
genomic: CACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAG-AAGCGGTCGTCGCCGGACAAGA
EST: gi|149103379|gb|EE288765.2|EE288765
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|149106408|gb|EE292135.2|EE292135
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|148953834|gb|EC899210.2|EC899210
EST:     CGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATTGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: CGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|149058026|gb|EE156710.2|EE156710
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|148933726|gb|EC877642.2|EC877642
EST:     CGCCTCCACCGTTGCCCACCGGCAGCCACCACCCGCCCCACCACCACAAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGGGGTCGTCGCCGGACAAGA
genomic: CGCCTCCACCGCTG-CCACCGGCAGCCACCACCCGCCCCACCACCAC-AGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGA
EST: gi|148961303|gb|EE012028.2|EE012028
EST:     CCGCCTCCACCGCTGCCACGGGCAGCCACCACCCGCCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: CCGCCTCCACCGCTGCCACCGGCAGCCACCACCCG-CCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|148958433|gb|EC904667.2|EC904667
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|76282270|gb|DV021838.1|DV021838
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|149073840|gb|EE162161.2|EE162161
EST:     TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|148997313|gb|EE035808.2|EE035808
EST:     TCCGCCTCCCCCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: TCCGCCTCCACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|148995104|gb|EE034396.2|EE034396
EST:     ACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAG                         GACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
genomic: ACCGCTGCCACCGGCAGCCACCACCCGCCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGGACAAGAC
EST: gi|91874845|gb|EB404802.1|EB404802
EST:     CCCCACCACCACAG                         GGCGGTCGAGGATCGATCAGGGGGGCGGAAGCGGTGGTCGCCGGGACAAGA
genomic: CCCCACCACCACAGgtaactgcga ... ttcttttcagGACCGTCGAGGATCGATCAGGCGGGCAGAAGCGGTCGTCGCCGG-ACAAGA