1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCGCCCTACCTGCGCAAGGTGGACCTGAAGACGTACGGCAGCTACAAGGACCTCTCCGCTGCACTCAAGAAGATGTTCGGCACCTTCGTCACCGCAACTGgtaaatctcaccccggcccgttggcataggaatctgcagcatacaagcttgtgaaccgaactgataccgatcgccacgcctttacaaattcggcgaatgcattgagttgagctgaacccacagaagctgtgcgtccatgatccgtcttaccag
species | Zea mays |
transcript | GRMZM2G077356_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTCTCCGCTGCACTCAAGAAGATGTTCGGCACCTTCGTCACCGCAACTG GGAACAGCATGAACGAGGGGAGATTGGTTGATCCGGCCGGCGATGCTGATGEST: gi|211444883|gb|FL459973.1|FL459973
genomic: CCTCTCCGCTGCACTCAAGAAGATGTTCGGCACCTTCGTCACCGCAACTGgtaaatctca ... gtcttaccagGGAACAGCATGAACGAGGGGAGATTGGTTGATCCGGCCGGCGATGCTGATG
EST: CCTCTCCGCTGCACTCAAGAAGATGTTCGGCACCTTCGTCACCGCAACTG GGAACAGCATGAACGAGGGGAGATTGGTTGATCCGGCCGGCGATGCTGATGEST: gi|18180193|gb|BM381403.1|BM381403
genomic: CCTCTCCGCTGCACTCAAGAAGATGTTCGGCACCTTCGTCACCGCAACTGgtaaatctca ... gtcttaccagGGAACAGCATGAACGAGGGGAGATTGGTTGATCCGGCCGGCGATGCTGATG
EST: CCTCTCCGCTGCACTCAAGAAGATGTTCGGCACCTTCGTCACCGCAACTG GGAACAGCATGAACGAGGGGAGATTGGTTGATCCGGCCGGCGATGCTGATG
genomic: CCTCTCCGCTGCACTCAAGAAGATGTTCGGCACCTTCGTCACCGCAACTGgtaaatctca ... gtcttaccagGGAACAGCATGAACGAGGGGAGATTGGTTGATCCGGCCGGCGATGCTGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCCCTACCTGCGCAAGGTGGACCTGAAGACGTACGGCAGCTACAAGGACCTCTCCGCTGCACTCAAGAAGATGTTCGGCACCTTCGTCACCGCAACTGgtaaatctcaccccggcccgttggcataggaatctgcagcatacaagcttgtgaaccgaactgataccgatcgccacgcctttacaaattcggcgaatgcattgagttgagctgaacccacagaagctgtgcgtccatgatccgtcttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG