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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGAGGTAGAGGCCACCCAGACGGCGACCCTCGCGGTGGACGCCTCGCCGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagtgatttcttggtacacaccagccttattgatcttacaaggatttgtccatgtaagcggaatggtccaaacacacttggtcgtgttctcagataaccaggttgctttcactgcag

Basic information

species Zea mays
transcript GRMZM2G077299_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71769116|gb|DR967053.1|DR967053
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|211315178|gb|FL384852.1|FL384852
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|211106638|gb|FL406855.1|FL406855
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|6194987|gb|AW147091.1|AW147091
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|211024644|gb|FL381981.1|FL381981
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         -A--TCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|211518127|gb|FL378400.1|FL378400
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|71769433|gb|DR967370.1|DR967370
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|211410871|gb|FL399291.1|FL399291
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|6194981|gb|AW147085.1|AW147085
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|101399286|gb|EB821516.1|EB821516
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|211542545|gb|FL409073.1|FL409073
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|74232033|gb|DT639947.1|DT639947
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCACCCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|211152046|gb|FL419672.1|FL419672
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|211148949|gb|FL408684.1|FL408684
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC
EST: gi|211464409|gb|FL419840.1|FL419840
EST:     CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAG                         GAGATCAACCATGCAGGGGCTGGTGGCATATNGGCTGAACTTGTTAGTAAC
genomic: CGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagt ... ttcactgcagGAGATCAACCATGCAGGGGCTGGTGGCATATGGGCTGAACTTGTTAGTAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCAGAGGTAGAGGCCACCCAGACGGCGACCCTCGCGGTGGACGCCTCGCCGCAGCTTGCTCGGAAGATCCCTGATACACTGTTCGGGATCTTCTTTGAGgtgagacagtgatttcttggtacacaccagccttattgatcttacaaggatttgtccatgtaagcggaatggtccaaacacacttggtcgtgttctcagataaccaggttgctttcactgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA