Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGGTGAACTCCAGGGCCAGGAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttcactcgattggctcttagtttttgctgctcgatcggctcgattgatgtgcggttttctcggtgatttatttttgggattggttggtgcctgtag

Basic information

species Zea mays
transcript GRMZM2G076826_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211035126|gb|FL190210.1|FL190210
EST:     AGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: AGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211509914|gb|FL437411.1|FL437411
EST:     ACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: ACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211192308|gb|FL065105.1|FL065105
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211194716|gb|FL065127.1|FL065127
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|32867201|gb|CF006883.1|CF006883
EST:     GAGCAGTTCGCCGCGTTCGTTCGCATCACCCACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211192318|gb|FL065115.1|FL065115
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211194714|gb|FL065125.1|FL065125
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|71441162|gb|DR822212.1|DR822212
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211194719|gb|FL065130.1|FL065130
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|32918882|gb|CF023694.1|CF023694
EST:     GAGCAGTTCGCCGCGTTCGTTCGCATCACCCACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211192306|gb|FL065103.1|FL065103
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211192313|gb|FL065110.1|FL065110
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGNTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|32910728|gb|CF015540.1|CF015540
EST:     GAGCAGTTCGCCGCGTTCGTTCGCATCACCCACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211192307|gb|FL065104.1|FL065104
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|9028809|gb|BE238849.1|BE238849
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211194717|gb|FL065128.1|FL065128
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|78108303|gb|DV526721.1|DV526721
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|84908620|gb|DW404498.1|DW404498
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211168429|gb|FL208191.1|FL208191
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|16920503|gb|BM074688.1|BM074688
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|71434664|gb|DR815714.1|DR815714
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|91051619|gb|EB162037.1|EB162037
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|32914815|gb|CF019627.1|CF019627
EST:     GAGCAGTTCGCCGCGTTCGTTCGCATCACCCACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211168428|gb|FL208190.1|FL208190
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211192309|gb|FL065106.1|FL065106
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|93016974|gb|EB642494.1|EB642494
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211192317|gb|FL065114.1|FL065114
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|32909263|gb|CF014075.1|CF014075
EST:     GAGCAGTTCGCCGCGTTCGTTCGCATCACCCACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|60337001|gb|DN203974.1|DN203974
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|74035341|gb|DT535830.1|DT535830
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|91875567|gb|EB405524.1|EB405524
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211194706|gb|FL065117.1|FL065117
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211192311|gb|FL065108.1|FL065108
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211194707|gb|FL065118.1|FL065118
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|86856043|gb|DY307054.1|DY307054
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACAAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211168430|gb|FL208192.1|FL208192
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211194709|gb|FL065120.1|FL065120
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211194715|gb|FL065126.1|FL065126
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|101398764|gb|EB821254.1|EB821254
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211197111|gb|FL065133.1|FL065133
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211194712|gb|FL065123.1|FL065123
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|78108000|gb|DV526418.1|DV526418
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|101394743|gb|EB819304.1|EB819304
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|32862788|gb|CF002470.1|CF002470
EST:     GAGCAGTTCGCCGCGTTCGTTCGCATCACCCACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|71441163|gb|DR822213.1|DR822213
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211197112|gb|FL065134.1|FL065134
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|32936588|gb|CF041407.1|CF041407
EST:     GAGCAGTTCGCCGCGTTCGTTCGCATCACCCACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|211194708|gb|FL065119.1|FL065119
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|32864482|gb|CF004164.1|CF004164
EST:     GAGCAGTTCGCCGCGTTCGTTCGCATCACCCACGCGGTTCAATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
EST: gi|78108001|gb|DV526419.1|DV526419
EST:     GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTG                         GCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC
genomic: GAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 425

TCTGGGTGAACTCCAGGGCCAGGAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 502

TCTGGGTGAACTCCAGGGCCAGGAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 338

TCTGGGTGAACTCCAGGGCCAGGAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 899

TCTGGGTGAACTCCAGGGCCAGGAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttc ... gtgcctgtagGCAGGAAGGAACGTGATGGCCAAGACGAGCTCGTTCAAGCTGGAGCACCCCCTTG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGGGTGAACTCCAGGGCCAGGAGCAGTTCGCCGCCTTCGTTCGCATCACCTACGCGGTTCGATCCAACTGgtaaggtttcactcgattggctcttagtttttgctgctcgatcggctcgattgatgtgcggttttctcggtgatttatttttgggattggttggtgcctgtag

- - - - - - - - - - - GAGCAG