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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTAGGAGTTGAGAAGACCGCTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctcaaccataaacatgaatgtttttctacaggcatttagtgcaaagtatctcaaatataatgttatatgttgctag

Basic information

species Zea mays
transcript GRMZM2G075485_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G075485_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 5'ss of exon 2
ATTCTAGGAGTTGAGAAGACCGCTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctcaaccataaacatgaatgtttttctacaggcatttagtgcaaagtatctcaaatataatgttatatgttgctag
||  |||| ||||||| ||| ||||| || || |||||||||||||| |||||||| |||||  | || || || ||||| ||||||||||| |||||||||| ||||       |||         |||| | || | ||| ||||| |  | |||||| |    |||||| || ||  ||
ATCTTAGGGGTTGAGAGGACAGCTTCACAGCAGGAAATAAAGAAGGCTTATCACAAGTTGGCCTTACGTCTTCATCCAGACAAGAATCCTGGAGATGAGgtaggatcttgtttccaaa---------ttttttccatggattaagtgccatttgtctcaattgagctgttatgtgatgtcag

upper sequence: GRMZM2G075485_T02 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA19G32480.1 (Glycine max), 5'ss of exon 2
ATTCTAGGAGTTGAGAAGACCGCTTCTCAACAAGAAATAAAGAAGGCGTATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc----aaccataaacatgaatgtttttct-----acaggcatttagtgcaaagtatctcaaatataatgttatatgttgctag-----------
  ||| || || ||||  || || ||||| || |||||||||||||||||  |||| |||||  |||| || ||||| |||||||| ||||| ||||| |  ||   ||    | ||  | |    |   |||||       |||    || | ||| |  | | |    | |  |  ||   |                  
--TCTTGGCGTGGAGAGAACGGCGTCTCAGCAGGAAATAAAGAAGGCGTACTACAAGTTGGCGTTGCGGCTTCACCCCGATAAGAACCCTGGTGATGATGAGgtcattcttctagccgaatatgccatcattttttatattgacaaatgttaattgctagttttttttttttttttaataggagggatcgaatccgcaacct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211337601|gb|FL103353.1|FL103353
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|78117499|gb|DV535886.1|DV535886
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|78116316|gb|DV534703.1|DV534703
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211337600|gb|FL103352.1|FL103352
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211339984|gb|FL103354.1|FL103354
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211342376|gb|FL103369.1|FL103369
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211339995|gb|FL103365.1|FL103365
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATNAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211337599|gb|FL103351.1|FL103351
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|91870824|gb|EB401103.1|EB401103
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211339988|gb|FL103358.1|FL103358
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211339990|gb|FL103360.1|FL103360
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211342377|gb|FL103370.1|FL103370
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211339987|gb|FL103357.1|FL103357
EST:     TCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAAG                         GAAGCCAAAGAAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTG
genomic: TCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGA-Ggtagtatctc ... atgttgctagGAAGCCAAAGA-GAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTG
EST: gi|211339985|gb|FL103355.1|FL103355
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211337598|gb|FL103350.1|FL103350
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211339993|gb|FL103363.1|FL103363
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|32909541|gb|CF014353.1|CF014353
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|71443604|gb|DR824654.1|DR824654
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211337592|gb|FL103344.1|FL103344
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|60341956|gb|DN208929.1|DN208929
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211342378|gb|FL103371.1|FL103371
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211339992|gb|FL103362.1|FL103362
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211337591|gb|FL103343.1|FL103343
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211339989|gb|FL103359.1|FL103359
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211337597|gb|FL103349.1|FL103349
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATNAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211339997|gb|FL103367.1|FL103367
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
EST: gi|211025378|gb|FL421223.1|FL421223
EST:     ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAG                         GAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA
genomic: ATCACAAATTGGCTCTGCGCCTCCACCCAGATAAGAATCCTGGGGATGAGgtagtatctc ... atgttgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTGGA