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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGCGCAATTCCTAACGCTAAGGTTGCGCAGCCGTCCGCCGTCGTATTGGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccataccctgctagctcgcatctttgctgagatatatgatctatgccttttccccccttttgatgattcctttgtggctttgctgcctttttatctgaaacag

Basic information

species Zea mays
transcript GRMZM2G075153_T05
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G075153_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g25940.4 (Oryza sativa), 5'ss of exon 2
GTCAGCGCAATTCCTAACGCTAAGGTTGCGCAGCCGTCCGCCGTCGTATTGGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccataccctgctagctcgcatctttgctgagatatatgatctatgccttttccccccttttgatgattccttt-gtggctttgctgcctttttatctgaaacag
||  |||| || || ||||| ||| | |  ||||||||||||| || |||||||||||    ||||||||| || ||||||||||||||||||||||||||||    | |  | |   || | |||  | |        |   |   ||   |||     ||||  |||| | ||| |||  |||| |   |   ||||  |     
GTTGGCGCCATCCCCAACGCCAAGCTCGGCCAGCCGTCCGCCGCCGCATTGGCCGAGCAGGCCCTGCTCGGTTCAGACGCCAGCCTCGCCGTCCACGCGGgta----atcacgatcaatcccctctcagatctatcgccttccccccgctgcttcggtttttttc-tgatccatttcgtgcttttgata--tacctatcgaag----

upper sequence: GRMZM2G075153_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g25940.2 (Oryza sativa), 5'ss of exon 1
GTCAGCGCAATTCCTAACGCTAAGGTTGCGCAGCCGTCCGCCGTCGTATTGGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccataccctgctagctcgcatctttgctgagatatatgatctatgccttttccccccttttgatgattc-ctttgtggctttgctgcctttttatctgaaacag
                                                                    ||| || ||||||||||||||||||||||||||||    | |  | |   || | |||  | |        |   |   ||   |||     ||||  |||| |  || |||  |||| |   |   ||||  |     
--------------------------------------------------------------------CGGTTCAGACGCCAGCCTCGCCGTCCACGCGGgta----atcacgatcaatcccctctcagatctatcgccttccccccgctgcttcggtttttttc-tgatccatttcgtgcttttgata--tacctatcgaag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38229609|gb|CF919922.1|CF919922
EST:     GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG                         GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: gi|30705385|gb|CD058765.1|CD058765
EST:     GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG                         GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: gi|149074757|gb|EE163186.2|EE163186
EST:     GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG                         GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: gi|211223662|gb|FL398674.1|FL398674
EST:     GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG                         GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: gi|148948278|gb|EC893795.2|EC893795
EST:     GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG                         GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: gi|89758469|gb|DY687640.1|DY687640
EST:     GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG                         GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: gi|76284198|gb|DV023766.1|DV023766
EST:     GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG                         GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: gi|149108488|gb|EE189677.2|EE189677
EST:     GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG                         GGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG
EST: gi|91873684|gb|EB403641.1|EB403641
EST:     GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGG                         GGGAGAGGCTGGGAAGAAGGATACCCACGGATGCTATCACCACGCCGGTAG
genomic: GGCCGAGCGTAACCTGCTCGGCTCCGACGCCAGCCTCGCCGTCCACGCGGgtaccatacc ... tctgaaacagGGGAGAGGCTGGGAAGAAGGATAGCCACGGATGCTATCACCACGCCGGTAG