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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGGCGGAGATAGCCAACTTCTTGGGCATCACACCTTCGGCGGACACCGAGGCGATTCAGgtgagagaaatggctggcctatatgtgttatgtgttaaatttgctggattttatgctgctattgccatgcaagataccaagatgtctagcacagcacaaatgcaaactgagatgtatggcgtgccatctttcatcagttcataactgtcgttgttgcag

Basic information

species Zea mays
transcript GRMZM2G075101_T01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32800119|gb|CD952355.1|CD952355
EST:     TAGCCAACTTCTTGGGCATCACACCTTCGGCGGACACCGAGGCGATTCAG                         GGTCGAGGTAGCTATGAGGAGCGGGTGGAACTGCTCCATCTTATTGTTGAC
genomic: TAGCCAACTTCTTGGGCATCACACCTTCGGCGGACACCGAGGCGATTCAGgtgagagaaa ... gttgttgcagGGTCGAGGTAGCTATGAGGAGCGGGTGGAACTGCTCCATCTTATTGTTGAC
EST: gi|88746013|gb|DY530154.1|DY530154
EST:     TAGCCAACTTCTTGGGCATCACACCTTCGGCGGACACCGAGGCGATTCAG                         GGTCGAGGTAGCTATGAGAGAGCGGGTGGAACTGCTCCATCTTATTGTTGA
genomic: TAGCCAACTTCTTGGGCATCACACCTTCGGCGGACACCGAGGCGATTCAGgtgagagaaa ... gttgttgcagGGTCGAGGTAGCTATGAG-GAGCGGGTGGAACTGCTCCATCTTATTGTTGA