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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGGCGAAGGAGGTGTCCTTCGGCGTTGGCGCCCGCGCCGCCATGCTGCAGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctccctgctttgcctctgacaagcggcggtcggtgtggatctagtggaactgctgggccttcccactgaactgagtgagctgcttgcttgggttgcag

Basic information

species Zea mays
transcript GRMZM2G074790_T03
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074790_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os05g46290.1 (Oryza sativa), 5'ss of exon 2
CACGGCGAAGGAGGTGTCCTTCGGCGTTGGCGCCCGCGCCGCCATGCTGCAGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctccctgctttgcctc-----------------tgacaag-------cggcggtcggtgtggatctagt---ggaactgctgggccttcccactgaa--------ctgagtgagc-tgcttgcttgggttgcag---
  |||||||||||||| | |||||||| || ||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||     |  |                 ||   ||       | ||| ||||  ||||||||||   ||||  ||| |   ||| ||||  |        |||| || || || |||  || || |  |   
TGCGGCGAAGGAGGTGGCGTTCGGCGTCGGAGCCCGGGCCGCCTTGCTGCAGGGCGTGAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgtgctctctgacagactccgagatgcgtggattggttggggagagtgttgcagcgatcgggctggatctagtggtggaagcgctagattttcgcactcgatttggcgactgaatgggcgtgtttgtctgtgtcgttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149014572|gb|EE044215.2|EE044215
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|71438972|gb|DR820022.1|DR820022
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|211181733|gb|FL012624.1|FL012624
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|28909718|gb|CB331067.1|CB331067
EST:     ACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: ACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|149083932|gb|EE173310.2|EE173310
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|149051769|gb|EE155894.2|EE155894
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|148966460|gb|EE017469.2|EE017469
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|78120143|gb|DV538527.1|DV538527
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|78118616|gb|DV537000.1|DV537000
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|148937683|gb|EC881881.2|EC881881
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|211181732|gb|FL012623.1|FL012623
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|67015320|gb|CO444069.1|CO444069
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|74242338|gb|DT650252.1|DT650252
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|149010196|gb|EE042014.2|EE042014
EST:     AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: AGGGCGTCAACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
EST: gi|31664231|gb|CD572956.1|CD572956
EST:     ACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAG                         GGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG
genomic: ACGACCTCGCCGACGCCGTCAAGGTCACCATGGGCCCCAAGgttcgcgctc ... tgggttgcagGGGCGCACTGTGATCATCGAGGGGTCCCATAAAGGTCCCAAGGTCACGAAG