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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACACCCGCCTCTCTGTCGGATACAGCATCCTCACGCGCGACCACTCTAAGATCTGCGACCTgtgagtccctgaacccgatctcgtgcttcgatctgtccatctgggctttagggtttgtggattgggaggcacgagtgaattttggtgtggcgtgggctaa...

Basic information

species Zea mays
transcript GRMZM2G074386_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074386_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 5'ss of exon 2
TGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACACCCGCCTCTCTGTCGGATACAGCATCCTCACGCGCGACCACTCTAAGATCTGCGACCTgtgagtccctgaacccgatctcgtgcttcgatctgtccatctgggctttagggtttgtggattgggaggcacgagtgaattt-tggtgtggc-gtgggctaa
|||||||||||||||| || ||||| || || || || || |||||||| || |||||||||| ||||||||||||||||||||| ||||||||||| |||| |||||| |  ||  ||| ||  |  ||||||| ||   | ||  ||||||||||| ||||||||||   | |||  ||| || || |   | | |   |
TGGCCATCGCCGGCGCGGACTACTGCGTGGTGGCCGCCGATACCCGCCTTTCCGTCGGATACAACATCCTCACGCGCGACCACTCCAAGATCTGCGAGCTgtaagtcccgg--ccgaatcgcggcccccgatctgcccgctttgggcttagggtttgttgattgggagggctgtgtgggtttgtgatgcgcttgggagtcga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67031178|gb|CO459927.1|CO459927
EST:     TCTGTCGGATACAGCATCCTCACGCGCGACCACTCTAAGATCTGCGACCT                         CATCTTCTGGCTTTCAGGGTGATATTAAAGCTCTGCACAAGAACCTAGCTG
genomic: TCTGTCGGATACAGCATCCTCACGCGCGACCACTCTAAGATCTGCGACCTgtgagtccct ... tgtgtactagCATCTTCTGGCTTTCAGGGTGATATTAAAGCTCTGCACAAGAACCTAGCTG