1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TATGGACAATGGACTAGTTGCTGCACTGCTTTTGTGAGTCACCATGGGAAGCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgatactgggactgtggcattatccttttaagtgaaaaagattacttggtaaaagtttgtccttctctgtaacag
species | Zea mays |
transcript | GRMZM2G074373_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAG GAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCAEST: gi|211035651|gb|FK982762.1|FK982762
genomic: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgata ... tctgtaacagGAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
EST: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAG GAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCAEST: gi|8367371|gb|BE050316.1|BE050316
genomic: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgata ... tctgtaacagGAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
EST: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAG GAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCAEST: gi|211035650|gb|FK982761.1|FK982761
genomic: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgata ... tctgtaacagGAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
EST: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAG GAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCAEST: gi|71318161|gb|DR795843.1|DR795843
genomic: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgata ... tctgtaacagGAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
EST: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAG GAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCAEST: gi|78090597|gb|DV518971.1|DV518971
genomic: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgata ... tctgtaacagGAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
EST: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAG GAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCAEST: gi|148976204|gb|EE025907.2|EE025907
genomic: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgata ... tctgtaacagGAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
EST: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAG GAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCAEST: gi|148963993|gb|EE015131.2|EE015131
genomic: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgata ... tctgtaacagGAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
EST: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAG GAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCAEST: gi|148930175|gb|EC872560.2|EC872560
genomic: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgata ... tctgtaacagGAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
EST: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAG GAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCAEST: gi|71439024|gb|DR820074.1|DR820074
genomic: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgata ... tctgtaacagGAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
EST: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAG GAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCAEST: gi|71426949|gb|DR807999.1|DR807999
genomic: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgata ... tctgtaacagGAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
EST: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAG GAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
genomic: GCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgata ... tctgtaacagGAGCAGCAACAACCTGCTACCTCAGGTGCTGCAACACCGGCTGTTTATCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATGGACAATGGACTAGTTGCTGCACTGCTTTTGTGAGTCACCATGGGAAGCAGTGGAGCAGATACATCGTCTAAGCCAAACAAGGCATCCGCCCCACAGgttcttgatactgggactgtggcattatccttttaagtgaaaaagattacttggtaaaagtttgtccttctctgtaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT